Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.6e-106 389.4 198 100.0
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 5.2e-105 384.4 198 98.5
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.1e-94 350.1 195 93.3
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 9.7e-51 204.1 181 66.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 5.3e-49 198.4 217 58.5
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 4.2e-46 188.7 216 58.8
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.4e-36 157.1 224 50.4
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.0e-36 156.0 220 51.8
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.7e-34 150.2 162 58.0
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 5.3e-33 145.2 192 49.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.2e-32 144.1 227 49.8
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.3e-31 140.6 154 53.2
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.6e-27 126.3 200 43.5
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.3e-27 125.9 157 55.4
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.5e-27 124.8 155 47.7
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 9.7e-27 124.4 167 50.3
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-26 124.0 190 45.8
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.7e-26 123.6 189 41.8
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 4.8e-26 122.1 188 45.2
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.3e-26 121.7 155 47.1
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 6.3e-26 121.7 141 49.6
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-25 120.9 173 42.8
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 3.1e-25 119.4 199 41.2
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 4.1e-25 119.0 186 40.9
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 7.0e-25 118.2 195 41.5
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-24 117.5 152 48.7
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.2e-24 117.5 151 47.0
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.0e-24 116.7 142 50.7
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.0e-24 116.7 190 39.5
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 2.7e-24 116.3 154 47.4
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.7e-24 116.3 187 44.9
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 3.5e-24 115.9 195 41.0
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 4.5e-24 115.5 175 44.6
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.2e-23 113.2 178 42.7
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.2e-23 113.2 195 41.5
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.8e-23 112.5 152 46.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 5.0e-23 112.1 151 49.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.5e-23 111.3 190 41.1
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.1e-22 110.9 143 47.6
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-22 110.5 190 40.5
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.9e-22 110.2 176 44.3
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.5e-22 109.8 142 45.8
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-22 109.8 141 46.1
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.5e-22 109.8 156 47.4
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 3.2e-22 109.4 142 50.0
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.2e-22 109.4 181 41.4
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 4.2e-22 109.0 141 48.2
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 9.4e-22 107.8 153 45.8
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 9.4e-22 107.8 200 42.5
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-21 107.5 186 40.9
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.2e-21 107.5 192 43.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.1e-21 106.7 196 40.3
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.7e-21 106.3 201 36.8
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 3.6e-21 105.9 196 40.3
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 3.6e-21 105.9 208 38.9
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 3.6e-21 105.9 154 45.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.6e-21 105.9 185 40.0
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.6e-21 105.9 166 39.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 4.7e-21 105.5 155 44.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.7e-21 105.5 181 40.9
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.7e-21 105.5 181 40.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 8.0e-21 104.8 201 40.3
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.4e-20 104.0 197 40.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.8e-20 103.6 151 43.7
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.3e-20 103.2 142 46.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 6.8e-20 101.7 141 45.4
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 8.8e-20 101.3 160 42.5
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.2e-19 100.9 176 40.9
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 2.6e-19 99.8 158 43.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 2.6e-19 99.8 158 43.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 2.6e-19 99.8 158 43.0
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 4.4e-19 99.0 149 45.0
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 5.7e-19 98.6 205 39.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.7e-18 95.9 168 42.9
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 6.3e-18 95.1 204 38.2
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.1e-17 94.4 170 40.0
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-17 94.4 167 42.5
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.8e-17 93.6 143 43.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-17 93.6 143 43.4
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.4e-17 93.2 166 38.6
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.4e-17 93.2 141 43.3
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 5.4e-17 92.0 180 39.4
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 7.0e-17 91.7 173 40.5
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 7.0e-17 91.7 208 37.0
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 9.1e-17 91.3 188 36.2
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.6e-16 90.5 182 40.7
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.7e-16 89.7 157 40.8
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.7e-16 89.7 164 43.3
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 4.5e-16 89.0 165 41.2
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 5.9e-16 88.6 173 38.2
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 7.7e-16 88.2 148 39.9
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 7.7e-16 88.2 174 36.2
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.0e-15 87.8 210 38.1
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.0e-15 87.8 174 40.8
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.3e-15 87.4 148 40.5
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.3e-15 87.4 155 38.1
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.7e-15 87.0 152 40.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-15 87.0 202 36.6
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.2e-15 86.7 145 40.7
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 3.8e-15 85.9 142 40.1
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 6.5e-15 85.1 161 40.4
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 8.5e-15 84.7 158 39.9
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 8.5e-15 84.7 148 39.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 8.5e-15 84.7 154 37.7
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.1e-14 84.3 158 38.6
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.5e-14 84.0 157 37.6
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.5e-14 84.0 157 38.9
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.5e-14 84.0 166 38.6
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.9e-14 83.6 157 37.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.9e-14 83.6 168 39.3
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 3.2e-14 82.8 153 38.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.2e-14 82.4 183 36.6
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 7.2e-14 81.6 157 41.4
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 9.4e-14 81.3 202 35.1
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 9.4e-14 81.3 179 36.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-13 80.5 158 37.3
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.6e-13 80.5 158 37.3
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.6e-13 80.5 203 35.5
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.7e-13 79.7 193 32.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.0e-12 76.3 138 39.1
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 5.2e-12 75.5 166 38.0
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 8.8e-12 74.7 192 37.5
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.5e-11 73.9 159 35.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.4e-11 72.4 155 32.3
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 5.7e-11 72.0 119 44.5
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.8e-11 71.2 187 31.6
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.2e-10 70.1 155 32.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.8e-10 69.7 188 31.4
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 3.7e-10 69.3 174 33.9
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 3.7e-10 69.3 142 38.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.8e-09 67.0 130 36.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.4e-09 66.6 164 34.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-08 64.3 168 32.1
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 5.9e-08 62.0 188 30.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.8e-07 59.3 141 31.9
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.1e-06 57.8 171 32.7
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.5e-06 57.4 152 33.6
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 5.6e-06 55.5 177 31.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.6e-06 55.5 176 27.8


User provided reference genes

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