Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.2e-148 528.9 259 100.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.2e-143 512.3 259 95.8
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 6.1e-138 494.2 259 91.9
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.3e-135 484.2 259 89.6
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 7.0e-134 480.7 259 90.0
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.1e-126 455.3 238 92.0
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-125 453.0 262 84.7
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.7e-125 452.2 241 90.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 3.4e-112 408.7 254 80.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.0e-104 382.9 259 69.1
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.4e-102 375.9 257 70.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 3.0e-100 369.0 259 68.0
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.9e-100 368.6 182 97.3
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 5.1e-100 368.2 257 68.1
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 8.6e-100 367.5 259 68.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 7.3e-99 364.4 262 67.2
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.6e-98 362.1 258 65.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 6.2e-98 361.3 259 66.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.1e-97 360.5 257 68.1
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.1e-97 360.5 257 66.5
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.5e-96 356.7 259 65.3
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.5e-96 356.7 259 64.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.3e-95 353.6 297 61.6
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.2e-95 352.8 257 64.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.9e-95 352.4 262 67.2
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.4e-94 349.4 259 65.6
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 9.2e-94 347.4 258 64.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.6e-93 346.7 259 64.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.6e-93 346.7 185 90.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.7e-93 345.9 258 64.3
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 6.0e-93 344.7 259 64.1
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 7.8e-93 344.4 261 64.8
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.0e-92 344.0 259 63.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.7e-92 343.2 257 65.4
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.3e-92 342.8 258 62.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.1e-91 340.5 258 62.8
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.9e-91 339.7 259 64.1
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 3.3e-91 339.0 259 64.1
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.6e-91 338.2 258 62.8
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-90 337.0 271 61.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.6e-90 335.5 263 65.0
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 4.7e-90 335.1 259 62.5
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 8.1e-90 334.3 258 62.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.4e-89 333.6 259 62.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.1e-89 332.4 259 60.6
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.0e-89 332.0 259 62.2
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 4.0e-89 332.0 259 61.4
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 6.9e-89 331.3 259 61.4
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 9.0e-89 330.9 259 62.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-88 330.5 258 60.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.2e-88 330.5 279 57.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.5e-88 330.1 259 59.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-88 330.1 262 60.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.0e-88 329.7 262 60.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-88 329.7 262 60.7
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 4.4e-88 328.6 256 61.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.4e-88 328.6 259 61.8
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.4e-88 328.6 262 63.0
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 9.9e-88 327.4 257 61.1
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.3e-87 327.0 221 69.2
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 3.8e-87 325.5 291 57.4
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.9e-87 325.1 259 59.5
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 6.4e-87 324.7 262 60.3
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 8.4e-87 324.3 281 56.6
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 8.4e-87 324.3 259 59.1
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 8.4e-87 324.3 326 53.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.9e-86 323.2 259 60.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.2e-86 322.4 255 61.2
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.2e-86 322.4 254 61.0
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.2e-86 322.4 258 60.1
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.2e-86 322.0 233 63.9
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 9.3e-86 320.9 262 58.8
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.6e-85 320.1 259 58.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.6e-85 320.1 218 65.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 4.6e-85 318.5 258 58.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.6e-85 318.5 238 64.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.0e-85 318.2 251 60.6
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.5e-83 313.5 261 58.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 7.3e-83 311.2 258 58.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.3e-82 310.5 278 55.4
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.8e-82 309.3 235 61.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.6e-82 308.9 258 57.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 4.0e-81 305.4 300 52.0
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.0e-81 304.3 209 66.0
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-80 303.9 207 66.2
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 8.4e-79 297.7 259 56.8
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.1e-78 297.4 200 66.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 2.4e-78 296.2 274 55.8
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.2e-78 295.4 237 59.9
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.7e-77 292.7 258 55.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.3e-76 290.4 237 58.6
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.3e-76 289.7 259 55.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.9e-75 286.6 259 54.4
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 5.6e-75 285.0 217 59.0
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-73 280.0 200 66.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.5e-72 276.9 239 56.5
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-72 276.9 151 88.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 4.5e-72 275.4 259 52.5
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.7e-71 273.5 259 52.9
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.5e-70 268.5 213 60.6
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 6.0e-69 265.0 303 48.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 7.9e-69 264.6 218 57.3
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 8.7e-68 261.2 219 58.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.1e-66 256.5 223 55.6
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.4e-65 253.8 183 63.9
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 9.3e-62 241.1 225 53.8
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 7.9e-61 238.0 130 88.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-59 234.2 263 49.4
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-57 227.3 196 57.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.9e-55 219.5 219 52.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-55 219.2 184 56.5
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 4.2e-54 215.7 264 43.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.5e-51 206.5 141 66.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 7.4e-51 204.9 176 57.4
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 9.7e-51 204.5 217 49.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.7e-50 203.8 213 44.1
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.2e-50 203.4 193 51.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.2e-48 197.6 170 57.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.6e-48 196.4 173 53.2
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 2.6e-48 196.4 187 51.9
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 5.0e-47 192.2 257 42.8
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 9.4e-46 188.0 166 57.2
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.4e-44 184.1 149 59.7
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-44 183.3 141 61.0
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 5.1e-44 182.2 150 65.3
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.2e-42 176.8 223 44.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.5e-38 162.2 130 57.7
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.1e-37 160.2 199 42.7
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-35 154.5 126 56.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.2e-34 150.2 215 38.1
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.7e-34 149.4 112 60.7
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.8e-33 147.1 116 57.8
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.1e-33 144.8 91 72.5
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.9e-32 142.1 91 71.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.7e-32 141.7 91 71.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-31 140.6 91 70.3
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.8e-31 139.4 372 27.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.5e-30 135.6 156 45.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.7e-29 133.3 69 87.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 3.6e-29 132.9 295 30.2
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.0e-28 131.3 72 81.9
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.8e-28 128.6 239 35.1
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.2e-26 123.6 221 32.1
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 2.8e-26 123.2 96 61.5
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.7e-21 106.7 67 65.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-21 106.3 67 68.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.7e-21 105.9 76 60.5
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.2e-20 102.4 67 64.2
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.7e-19 99.0 81 59.3
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.8e-17 94.0 88 50.0
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 2.4e-17 93.6 82 57.3
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 2.3e-15 87.0 82 53.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.5e-14 83.6 63 58.7
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-13 81.3 85 52.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.5e-11 74.3 59 57.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 3.7e-10 69.7 42 71.4
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.0e-08 63.9 83 45.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 5.9e-08 62.4 48 58.3
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 7.8e-08 62.0 66 51.5
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.9e-07 60.1 60 48.3


User provided reference genes

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