Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g017320.3 Solanum lycopersicum HOM05D000001 ORTHO05D390449 1.6e-58 229.2 114 100.0
Sopen11g009290 Solanum pennellii HOM05D000001 ORTHO05D009494 4.6e-37 157.9 195 49.7
Solyc11g017370.3 Solanum lycopersicum HOM05D000001 ORTHO05D009494 1.1e-35 153.3 195 48.2
PGSC0003DMG402009242 Solanum tuberosum HOM05D000001 ORTHO05D009494 1.9e-35 152.5 195 48.2
Peaxi162Scf00310g00083 Petunia axillaris HOM05D000001 ORTHO05D009494 2.1e-34 149.1 194 46.9
CAN.G526.10 Capsicum annuum HOM05D000001 ORTHO05D009494 6.2e-34 147.5 195 45.1
Nitab4.5_0000560g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009494 6.8e-33 144.1 194 45.9
Nitab4.5_0010892g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009494 1.5e-32 142.9 194 45.9
SGA_v2.0_scaffold2G01357 Striga asiatica HOM05D000001 ORTHO05D009494 1.6e-18 96.3 195 32.8
Migut.F01718 Erythranthe guttata HOM05D000001 ORTHO05D009494 2.1e-18 95.9 192 33.3
AUR62003543 Chenopodium quinoa HOM05D000001 ORTHO05D009494 1.4e-17 93.2 193 29.5
AUR62017856 Chenopodium quinoa HOM05D000001 ORTHO05D009494 1.8e-17 92.8 193 29.0
Oeu027261.2 Olea europaea HOM05D000001 ORTHO05D009494 5.3e-17 91.3 200 30.5
Ah.02g121210 Amaranthus hybridus HOM05D000001 ORTHO05D009494 1.5e-16 89.7 197 29.9
MSTRG.8133 Avicennia marina HOM05D000001 ORTHO05D009494 1.5e-16 89.7 199 31.7
Sed0019947 Sechium edule HOM05D000001 ORTHO05D009494 2.6e-16 89.0 201 30.3
CsaV3_4G032500 Cucumis sativus L. HOM05D000001 ORTHO05D009494 4.5e-16 88.2 201 30.3
unitig_899.g15355 Utricularia gibba HOM05D000001 ORTHO05D009494 4.5e-16 88.2 195 30.3
Hma1.2p1_1222F.1_g268290 Hydrangea macrophylla HOM05D000001 ORTHO05D009494 7.6e-16 87.4 199 29.6
Hund12760 Selenicereus undatus HOM05D000001 ORTHO05D009494 7.6e-16 87.4 193 31.1
Sc08g0002520 Simmondsia chinensis HOM05D000001 ORTHO05D009494 1.3e-15 86.7 197 31.5
Cc11_g04660 Coffea canephora HOM05D000001 ORTHO05D009494 2.2e-15 85.9 194 31.4
MELO3C032516.2 Cucumis melo HOM05D000001 ORTHO05D009494 2.2e-15 85.9 201 29.9
Lj1P1038T31 Lonicera japonica HOM05D000001 ORTHO05D009494 2.9e-15 85.5 193 30.6
SalBow6G2474 Salvia bowleyana HOM05D000001 ORTHO05D009494 2.9e-15 85.5 194 32.0
vmacro11196 Vaccinium macrocarpon HOM05D000001 ORTHO05D009494 2.9e-15 85.5 160 34.4
RcHm_v2.0_Chr2g0153281 Rosa chinensis HOM05D000001 ORTHO05D009494 4.9e-15 84.7 191 31.4
TWI60G1389 Tripterygium wilfordii HOM05D000001 ORTHO05D009494 1.1e-14 83.6 199 31.2
AT3G22150 Arabidopsis thaliana HOM05D000001 ORTHO05D009494 1.4e-14 83.2 195 30.8
BcaC05g28099 Brassica carinata HOM05D000001 ORTHO05D009494 1.4e-14 83.2 196 31.6
C05p41260 Brassica napus HOM05D000001 ORTHO05D009494 1.4e-14 83.2 196 31.6
BolC5t32868H Brassica oleracea HOM05D000001 ORTHO05D009494 1.4e-14 83.2 196 31.6
BraA05t21544Z Brassica rapa HOM05D000001 ORTHO05D009494 3.2e-14 82.0 196 31.1
CSS0005572 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009494 4.2e-14 81.6 205 29.3
Dinv11349 Davidia involucrata HOM05D000100 ORTHO05D009494 4.2e-14 81.6 205 29.8
AL3G36340 Arabidopsis lyrata HOM05D000001 ORTHO05D009494 5.4e-14 81.3 199 30.2
Thhalv10020073m.g Eutrema salsugineum HOM05D000001 ORTHO05D009494 5.4e-14 81.3 199 29.6
Ciclev10011066m.g Citrus clementina HOM05D000001 ORTHO05D009494 9.3e-14 80.5 203 30.0
CSS0035538 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009494 1.6e-13 79.7 205 28.8
HanXRQChr13g0421851 Helianthus annuus HOM05D000100 ORTHO05D009494 1.6e-13 79.7 184 31.0
QL04p063285 Quercus lobata HOM05D000001 ORTHO05D009494 1.6e-13 79.7 204 28.4
Sp3g19960 Schrenkiella parvula HOM05D000001 ORTHO05D009494 1.6e-13 79.7 199 29.1
Atru.BG.220.p Acer truncatum HOM05D000001 ORTHO05D009494 2.1e-13 79.3 202 29.7
Lsat_1_v5_gn_3_119881 Lactuca sativa HOM05D000001 ORTHO05D009494 2.1e-13 79.3 187 28.9
TPR.G33477 Trifolium pratense HOM05D000001 ORTHO05D009494 2.7e-13 79.0 189 28.6
Cfa023360 Carpinus fangiana HOM05D000001 ORTHO05D009494 6.0e-13 77.8 201 27.4
Actinidia03867 Actinidia chinensis HOM05D000001 ORTHO05D009494 1.0e-12 77.0 203 27.6
CARHR098020 Cardamine hirsuta HOM05D000001 ORTHO05D009494 1.0e-12 77.0 200 28.5
Haze_13549 Corylus avellana HOM05D000001 ORTHO05D009494 1.0e-12 77.0 201 27.4
Cpa.g.sc8.267 Carica papaya HOM05D000001 ORTHO05D009494 3.9e-12 75.1 204 27.9
Prupe.3G184500 Prunus persica HOM05D000001 ORTHO05D009494 3.9e-12 75.1 198 27.8
Carub.0003s2232 Capsella rubella HOM05D000001 ORTHO05D009494 5.1e-12 74.7 199 29.6
Lalb_Chr04g0247031 Lupinus albus HOM05D000001 ORTHO05D009494 5.1e-12 74.7 194 26.8
Eucgr.K01351 Eucalyptus grandis HOM05D000001 ORTHO05D009494 8.7e-12 73.9 205 28.3
MD09G1141900 Malus domestica HOM05D000001 ORTHO05D009494 8.7e-12 73.9 195 27.2
Potri.006G007800 Populus trichocarpa HOM05D000001 ORTHO05D009494 8.7e-12 73.9 201 27.4
Gohir.D07G177300 Gossypium hirsutum HOM05D000001 ORTHO05D009494 1.1e-11 73.6 204 28.4
Psat2g001640 Pisum sativum HOM05D000001 ORTHO05D009494 1.1e-11 73.6 187 27.8
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 1.1e-11 73.6 196 27.6
EL10Ac6g15338 Beta vulgaris HOM05D000001 ORTHO05D009494 3.3e-11 72.0 56 57.1
Gorai.001G198300 Gossypium raimondii HOM05D000001 ORTHO05D009494 3.3e-11 72.0 204 27.9
Sabra06G0006100 Salix brachista HOM05D000001 ORTHO05D009494 3.3e-11 72.0 201 27.9
TAR381G0203 Trochodendron aralioides HOM05D000001 ORTHO05D009494 3.3e-11 72.0 207 27.1
CANSAT25G2259 Cannabis sativa HOM05D000001 ORTHO05D009494 4.3e-11 71.6 193 28.5
Duzib133G1443 Durio zibethinus HOM05D000001 ORTHO05D009494 4.3e-11 71.6 204 26.5
Thecc.01G174200 Theobroma cacao HOM05D000001 ORTHO05D009494 5.6e-11 71.2 204 26.5
Manes.09G070519 Manihot esculenta HOM05D000001 ORTHO05D009494 7.4e-11 70.9 200 28.5
Gohir.A07G164856 Gossypium hirsutum HOM05D000001 ORTHO05D009494 9.6e-11 70.5 204 27.0
CiPaw.03G110200 Carya illinoinensis HOM05D000001 ORTHO05D009494 1.3e-10 70.1 198 26.8
MD09G1141000 Malus domestica HOM05D000001 ORTHO05D009494 1.3e-10 70.1 166 31.3
Solyc11g017340.1 Solanum lycopersicum HOM05D000001 ORTHO05D389848 1.3e-10 70.1 39 87.2
Aa31LG8G8710 Aethionema arabicum HOM05D000001 ORTHO05D009494 2.8e-10 68.9 50 62.0
COL.COLO4_19982 Corchorus olitorius HOM05D000001 ORTHO05D009494 2.8e-10 68.9 204 26.0
Medtr5g098860 Medicago truncatula HOM05D000001 ORTHO05D009494 2.8e-10 68.9 188 26.6
Nn1g09315 Nelumbo nucifera HOM05D000001 ORTHO05D009494 2.8e-10 68.9 207 28.0
Aqoxy1G02917 Aquilegia oxysepala HOM05D000001 ORTHO05D009494 4.8e-10 68.2 198 28.3
Ca_06493_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009494 4.8e-10 68.2 190 25.3
FvH4_5g30430 Fragaria vesca HOM05D000001 ORTHO05D009494 1.1e-09 67.0 184 28.8
FAN18G1238 Fragaria x ananassa HOM05D000001 ORTHO05D009494 1.1e-09 67.0 184 28.8
BcaB06g26313 Brassica carinata HOM05D000001 ORTHO05D009494 1.4e-09 66.6 177 28.8
PGR102G2228 Punica granatum HOM05D000001 ORTHO05D009494 1.4e-09 66.6 201 25.4
THA.LOC104808509 Tarenaya hassleriana HOM05D000001 ORTHO05D009494 1.4e-09 66.6 191 27.7
FAN13G2276 Fragaria x ananassa HOM05D000001 ORTHO05D009494 9.0e-09 63.9 184 28.3
LjContig00081g0014444 Lotus japonicus HOM05D000001 ORTHO05D009494 9.0e-09 63.9 196 24.5
FAN08G2373 Fragaria x ananassa HOM05D000001 ORTHO05D009494 1.5e-08 63.2 183 27.9
arahy.Tifrunner.gnm1.ann1.Q8WFXK Arachis hypogaea HOM05D000001 ORTHO05D009494 2.6e-08 62.4 198 26.8
PSO063G6162 Papaver somniferum HOM05D000001 ORTHO05D009494 3.4e-08 62.0 198 27.3
Glyma.02G309700 Glycine max HOM05D000001 ORTHO05D009494 1.3e-07 60.1 187 25.1
Glyma.14G003000 Glycine max HOM05D000001 ORTHO05D009494 1.7e-07 59.7 184 24.5
PSO782G2739 Papaver somniferum HOM05D000001 ORTHO05D009494 1.7e-07 59.7 198 27.3
CiPaw.03G110700 Carya illinoinensis HOM05D000001 ORTHO05D009494 2.2e-07 59.3 60 46.7
MD09G1141400 Malus domestica HOM05D000001 ORTHO05D009494 2.9e-07 58.9 126 34.1
Atru.chr8.1009 Acer truncatum HOM05D000001 ORTHO05D009494 8.4e-07 57.4 49 53.1
Phvul.008G290100 Phaseolus vulgaris HOM05D000001 ORTHO05D009494 1.1e-06 57.0 187 25.7


User provided reference genes

Program Settings