Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.7e-214 746.5 366 100.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.4e-199 699.5 349 98.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.4e-149 531.2 335 76.4
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.8e-147 524.2 349 73.1
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.2e-141 506.1 343 72.9
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.9e-140 503.1 324 75.9
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.2e-139 500.4 351 70.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.6e-139 500.0 278 87.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.5e-137 493.4 282 86.5
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 5.6e-137 491.5 343 72.3
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.1e-136 489.6 350 69.7
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 3.1e-135 485.7 357 67.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.8e-134 481.5 319 72.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 9.9e-134 480.7 346 68.5
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.4e-132 476.9 350 68.0
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 2.4e-132 476.1 324 71.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.2e-132 475.7 245 92.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.2e-132 475.7 325 72.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 5.4e-132 474.9 350 69.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 2.1e-131 473.0 350 69.4
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.7e-131 472.6 390 63.6
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.7e-130 469.9 350 67.7
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.3e-130 469.5 319 71.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.3e-130 469.5 319 71.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 3.0e-130 469.2 329 69.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-129 466.8 324 68.8
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.9e-129 466.5 346 67.9
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.3e-129 464.5 316 73.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-128 463.8 321 69.5
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.6e-128 463.4 328 70.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.8e-128 462.6 309 72.2
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.6e-128 462.2 322 68.9
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.6e-128 462.2 349 66.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.6e-128 462.2 340 67.6
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-127 460.7 322 68.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-127 460.7 362 64.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.4e-127 460.3 346 67.1
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.8e-127 459.9 343 67.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.1e-127 459.1 348 66.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.1e-127 459.1 313 71.6
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.3e-127 458.4 348 66.1
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.9e-127 458.0 346 66.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.9e-127 458.0 332 67.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.0e-127 457.6 328 67.7
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 9.0e-127 457.6 349 66.2
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.5e-126 456.8 350 65.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 2.0e-126 456.4 325 68.0
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.0e-126 456.4 321 68.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.3e-125 453.8 340 66.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.3e-125 453.8 340 66.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.2e-125 453.0 324 68.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.8e-125 452.2 349 65.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 4.9e-125 451.8 322 67.4
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.2e-124 448.7 331 67.1
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.1e-123 446.4 268 79.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 7.9e-123 444.5 401 58.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 3.0e-122 442.6 335 66.6
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 5.1e-122 441.8 324 69.1
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 5.1e-122 441.8 318 67.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 6.6e-122 441.4 341 65.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.7e-122 441.0 341 64.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-121 440.7 369 62.9
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-121 440.7 369 62.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.3e-121 439.1 320 67.8
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.3e-121 438.7 318 67.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 5.6e-121 438.3 341 67.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 7.4e-121 438.0 312 68.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 9.6e-121 437.6 340 64.7
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 9.6e-121 437.6 344 64.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.3e-120 437.2 319 68.0
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.6e-120 436.8 345 63.8
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.6e-120 436.8 319 67.7
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.6e-120 436.8 398 59.0
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.1e-120 436.4 335 66.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.4e-119 433.0 311 67.2
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 4.5e-118 428.7 306 69.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 9.9e-118 427.6 320 66.2
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-117 427.2 307 67.4
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 2.9e-117 426.0 320 66.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 8.4e-117 424.5 334 65.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.4e-116 422.9 299 70.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.4e-116 422.9 311 67.5
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.2e-116 422.2 314 66.9
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 7.1e-116 421.4 330 63.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.9e-114 415.6 394 57.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.9e-114 415.6 312 63.5
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 8.7e-114 414.5 324 64.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-113 414.1 335 63.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.4e-113 411.4 329 64.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.7e-112 409.1 331 64.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.1e-111 407.5 260 74.2
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.2e-109 399.8 261 72.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 7.9e-107 391.3 252 73.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.1e-105 387.5 291 65.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 4.1e-103 379.0 329 59.3
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.9e-102 375.2 410 50.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.1e-100 370.9 345 58.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.3e-100 367.9 318 58.2
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-98 364.4 279 65.9
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.3e-97 359.4 289 61.9
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 7.4e-97 358.2 357 53.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.6e-96 357.1 339 56.9
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.6e-96 357.1 327 59.9
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 4.8e-96 355.5 349 55.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.6e-94 349.7 320 56.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 4.5e-94 349.0 208 76.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.5e-94 349.0 319 57.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.3e-93 347.4 314 58.3
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 9.4e-92 341.3 319 57.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-91 340.9 327 58.4
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.6e-91 339.3 339 56.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-91 339.0 319 58.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 3.0e-90 336.3 340 55.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.0e-90 336.3 327 53.5
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.0e-89 333.6 227 71.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.7e-89 332.0 321 57.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 9.1e-87 324.7 323 52.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.4e-86 322.8 375 50.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.9e-85 319.7 247 64.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.5e-81 307.4 246 61.4
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 9.7e-81 304.7 343 53.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.2e-78 297.7 260 61.2
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.6e-75 286.2 276 54.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.7e-73 278.1 352 45.2
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.4e-65 253.1 306 45.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 5.7e-65 252.3 305 45.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.8e-63 247.3 301 44.5
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.1e-63 246.1 305 44.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 5.5e-60 235.7 151 76.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 6.1e-59 232.3 240 52.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.4e-55 221.1 149 73.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.1e-52 211.5 133 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.6e-51 207.6 251 43.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 8.9e-50 201.8 243 43.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-48 198.0 209 45.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.3e-48 198.0 160 60.0
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.9e-48 196.8 113 83.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.7e-48 196.4 334 39.5
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-42 178.3 301 35.9
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.2e-39 166.8 236 42.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 5.4e-39 166.0 222 41.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 4.3e-36 156.4 88 81.8
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-34 151.8 239 36.4
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 8.9e-34 148.7 280 33.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-26 125.2 373 27.3
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.2e-26 122.9 217 35.5
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-25 120.2 301 30.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-24 117.9 72 79.2
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-24 117.9 72 79.2
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.8e-24 116.7 72 77.8
Nitab4.5_0000159g0060 Nicotiana tabacum HOM05D056068 ORTHO05D005020 4.1e-23 113.2 81 72.8
Nitab4.5_0003518g0040 Nicotiana tabacum HOM05D056068 ORTHO05D005020 1.6e-22 111.3 81 72.8
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-21 108.2 113 41.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 3.0e-21 107.1 114 39.5
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.1e-21 106.3 163 38.0
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 6.6e-21 105.9 303 30.0
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 8.6e-21 105.5 211 34.6
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.6e-21 105.5 153 42.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.6e-21 105.5 84 63.1
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 3.6e-19 100.1 306 26.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.2e-17 95.1 246 26.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.9e-16 90.5 60 71.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.9e-12 77.8 79 54.4
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 6.2e-11 72.8 99 44.4


User provided reference genes

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