Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.4e-63 245.4 124 100.0
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 1.5e-54 216.1 122 88.5
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.0e-54 215.7 122 91.0
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 4.5e-54 214.5 121 89.3
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.8e-54 214.2 122 87.7
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.3e-53 213.0 122 87.7
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 1.4e-52 209.5 122 86.9
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.0e-50 201.8 122 83.6
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.8e-47 192.6 120 80.8
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 4.1e-47 191.4 120 80.0
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 4.3e-41 171.4 122 70.5
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 4.8e-40 167.9 122 69.7
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 4.8e-40 167.9 122 69.7
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 6.3e-40 167.5 122 68.9
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 7.7e-38 160.6 122 63.1
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 7.9e-35 150.6 123 61.8
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.5e-33 146.4 115 65.2
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.5e-33 146.4 124 61.3
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.0e-33 146.0 124 62.1
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 7.4e-33 144.1 124 60.5
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 5.0e-29 131.3 120 58.3
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.1e-28 130.2 123 56.9
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.5e-28 129.0 122 56.6
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 2.5e-28 129.0 122 55.7
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 1.6e-19 99.8 122 44.3
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 1.4e-18 96.7 127 45.7
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 2.6e-17 92.4 124 41.9
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 2.6e-17 92.4 117 38.5
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.8e-16 89.0 121 41.3
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.8e-16 88.2 121 41.3
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.8e-16 88.2 110 45.5
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 9.1e-15 84.0 104 48.1
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 1.2e-14 83.6 105 44.8
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 1.2e-14 83.6 104 46.2
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 2.7e-14 82.4 121 38.0
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 3.5e-14 82.0 110 41.8
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 3.5e-14 82.0 114 38.6
Solyc05g026250.3 Solanum lycopersicum HOM05D000651 ORTHO05D051254 3.5e-14 82.0 122 41.0
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 7.7e-14 80.9 117 41.0
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 7.7e-14 80.9 122 36.9
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 1.0e-13 80.5 111 40.5
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.3e-13 80.1 111 41.4
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 1.3e-13 80.1 123 38.2
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.7e-13 79.7 99 43.4
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 2.2e-13 79.3 112 41.1
Solyc10g150139.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.9e-13 79.0 55 70.9
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.8e-13 78.6 111 41.4
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 6.5e-13 77.8 112 39.3
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 6.5e-13 77.8 123 36.6
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 6.5e-13 77.8 123 36.6
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 6.5e-13 77.8 104 44.2
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 6.5e-13 77.8 115 41.7
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 6.5e-13 77.8 112 41.1
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 8.5e-13 77.4 92 44.6
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 1.5e-12 76.6 103 42.7
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 1.5e-12 76.6 114 36.8
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 1.5e-12 76.6 124 33.9
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.5e-12 76.6 121 34.7
Sopen05g022500 Solanum pennellii HOM05D000651 ORTHO05D003990 1.9e-12 76.3 45 77.8
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 2.5e-12 75.9 101 42.6
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 2.5e-12 75.9 80 50.0
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 2.5e-12 75.9 99 40.4
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 2.5e-12 75.9 95 40.0
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 2.5e-12 75.9 112 36.6
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 4.2e-12 75.1 111 38.7
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 4.2e-12 75.1 124 33.9
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 4.2e-12 75.1 124 33.9
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 4.2e-12 75.1 120 36.7
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 5.5e-12 74.7 124 33.9
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 7.2e-12 74.3 111 37.8
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 9.4e-12 73.9 90 48.9
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.2e-11 73.6 111 37.8
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 1.2e-11 73.6 114 38.6
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 1.2e-11 73.6 118 36.4
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 1.6e-11 73.2 111 37.8
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 1.6e-11 73.2 113 36.3
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 2.7e-11 72.4 116 39.7
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 2.7e-11 72.4 107 34.6
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 3.6e-11 72.0 117 35.9
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 4.7e-11 71.6 122 34.4
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 8.0e-11 70.9 104 38.5
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 8.0e-11 70.9 92 45.7
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 1.4e-10 70.1 103 40.8
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 1.4e-10 70.1 126 32.5
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 1.8e-10 69.7 113 36.3
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 2.3e-10 69.3 124 37.1
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 2.3e-10 69.3 109 39.4
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 3.0e-10 68.9 81 48.1
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 3.0e-10 68.9 82 42.7
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 3.0e-10 68.9 103 35.9
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 3.0e-10 68.9 114 36.0
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 3.0e-10 68.9 102 36.3
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 4.0e-10 68.6 69 49.3
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 5.2e-10 68.2 62 53.2
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 5.2e-10 68.2 71 52.1
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 6.8e-10 67.8 71 43.7
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 6.8e-10 67.8 92 40.2
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 6.8e-10 67.8 119 32.8
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 6.8e-10 67.8 102 39.2
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 8.8e-10 67.4 61 50.8
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 8.8e-10 67.4 87 42.5
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 8.8e-10 67.4 111 34.2
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 1.2e-09 67.0 102 40.2
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 1.2e-09 67.0 110 35.5
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.2e-09 67.0 110 35.5
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 1.5e-09 66.6 74 41.9
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 1.5e-09 66.6 71 53.5
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 1.5e-09 66.6 118 34.7
Solyc11g013710.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.5e-09 66.6 35 88.6
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 2.0e-09 66.2 66 50.0
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 2.6e-09 65.9 82 42.7
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 2.6e-09 65.9 137 32.8
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 3.4e-09 65.5 98 38.8
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 4.4e-09 65.1 102 37.3
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 4.4e-09 65.1 74 41.9
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 5.7e-09 64.7 66 45.5
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 7.5e-09 64.3 117 31.6
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 7.5e-09 64.3 115 35.7
Zm00001eb427820 Zea mays HOM05D000651 ORTHO05D003990 7.5e-09 64.3 71 45.1
Solyc11g013720.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.8e-09 63.9 35 88.6
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.3e-08 63.5 62 50.0
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 1.3e-08 63.5 103 39.8
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 1.3e-08 63.5 118 33.9
Zm00001eb075100 Zea mays HOM05D000651 ORTHO05D003990 1.3e-08 63.5 71 45.1
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 2.2e-08 62.8 73 42.5
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 2.8e-08 62.4 116 35.3
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 3.7e-08 62.0 72 45.8
HPP92_003328 Vanilla planifolia HOM05D032523 ORTHO05D003990 3.7e-08 62.0 79 40.5
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 6.3e-08 61.2 102 35.3
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 6.3e-08 61.2 118 31.4
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 6.3e-08 61.2 64 50.0
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 8.3e-08 60.8 102 37.3
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 8.3e-08 60.8 102 37.3
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 8.3e-08 60.8 102 39.2
HPP92_003335 Vanilla planifolia HOM05D032523 ORTHO05D003990 8.3e-08 60.8 79 39.2
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 1.1e-07 60.5 107 37.4
Sopen05g022510 Solanum pennellii HOM05D000651 ORTHO05D003990 1.1e-07 60.5 39 69.2
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 1.8e-07 59.7 119 35.3
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 1.8e-07 59.7 115 36.5
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 1.8e-07 59.7 78 35.9
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 1.8e-07 59.7 115 33.0
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 1.8e-07 59.7 93 33.3
Solyc10g075173.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.4e-07 59.3 35 77.1
vmacro17784 Vaccinium macrocarpon HOM05D003305 ORTHO05D001298 3.1e-07 58.9 62 41.9
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 4.1e-07 58.5 55 50.9
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 4.1e-07 58.5 112 36.6
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 7.0e-07 57.8 103 37.9
MD14G1235000 Malus domestica HOM05D003305 ORTHO05D001298 7.0e-07 57.8 64 39.1
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 1.2e-06 57.0 99 36.4
Glyma.11G216300 Glycine max HOM05D002447 ORTHO05D001298 1.2e-06 57.0 61 45.9
GSVIVG01008411001 Vitis vinifera HOM05D003305 ORTHO05D001298 1.2e-06 57.0 62 40.3
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.6e-06 56.6 73 39.7
SalBow1G4743 Salvia bowleyana HOM05D003305 ORTHO05D001298 1.6e-06 56.6 62 38.7
Solyc05g026260.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.6e-06 56.6 38 68.4
TAR622G0364 Trochodendron aralioides HOM05D003305 ORTHO05D001298 2.0e-06 56.2 62 38.7
TAR622G1365 Trochodendron aralioides HOM05D003305 ORTHO05D001298 2.0e-06 56.2 62 38.7
Atru.chr1.1906 Acer truncatum HOM05D002447 ORTHO05D001298 2.7e-06 55.8 61 42.6
Manes.02G076600 Manihot esculenta HOM05D002447 ORTHO05D001298 2.7e-06 55.8 61 45.9
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 2.7e-06 55.8 85 38.8
Aqoxy3G00110 Aquilegia oxysepala HOM05D003305 ORTHO05D001298 3.5e-06 55.5 62 37.1
Ciclev10012880m.g Citrus clementina HOM05D002447 ORTHO05D001298 3.5e-06 55.5 61 42.6
Dinv28051 Davidia involucrata HOM05D002447 ORTHO05D001298 3.5e-06 55.5 63 41.3
Lj4g0004392 Lotus japonicus HOM05D003305 ORTHO05D001298 3.5e-06 55.5 62 38.7
Sabra10G0080100 Salix brachista HOM05D002447 ORTHO05D001298 3.5e-06 55.5 66 40.9
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 3.5e-06 55.5 102 35.3
HanXRQChr08g0227291 Helianthus annuus HOM05D003305 ORTHO05D001298 4.5e-06 55.1 61 39.3
Potri.008G132400 Populus trichocarpa HOM05D002447 ORTHO05D001298 4.5e-06 55.1 60 41.7
MSTRG.9293 Avicennia marina HOM05D003305 ORTHO05D001298 5.9e-06 54.7 62 35.5
CSS0006846 Camellia sinensis var. sinensis HOM05D003305 ORTHO05D001298 5.9e-06 54.7 62 38.7
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 5.9e-06 54.7 65 43.1
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 7.7e-06 54.3 54 51.9
Migut.D01563 Erythranthe guttata HOM05D003305 ORTHO05D001298 7.7e-06 54.3 62 37.1
FvH4_5g17210 Fragaria vesca HOM05D003305 ORTHO05D001298 7.7e-06 54.3 64 40.6
FAN08G2597 Fragaria x ananassa HOM05D003305 ORTHO05D001298 7.7e-06 54.3 62 41.9
FAN13G3137 Fragaria x ananassa HOM05D003305 ORTHO05D001298 7.7e-06 54.3 64 40.6
FAN18G3362 Fragaria x ananassa HOM05D003305 ORTHO05D001298 7.7e-06 54.3 64 40.6
HanXRQChr08g0221451 Helianthus annuus HOM05D003305 ORTHO05D001298 7.7e-06 54.3 61 41.0
Sc11g0001020 Simmondsia chinensis HOM05D002447 ORTHO05D001298 7.7e-06 54.3 61 44.3
GSVIVG01011701001 Vitis vinifera HOM05D002447 ORTHO05D001298 7.7e-06 54.3 71 39.4


User provided reference genes

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