Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.3e-79 299.7 153 100.0
Solyc11g013620.1 Solanum lycopersicum HOM05D000095 ORTHO05D011717 7.8e-32 141.0 80 92.5
Sopen11g008590 Solanum pennellii HOM05D000095 ORTHO05D011717 7.3e-30 134.4 80 88.8
Sopen11g008630 Solanum pennellii HOM05D000095 ORTHO05D011717 2.3e-28 129.4 81 85.2
Solyc11g013560.1 Solanum lycopersicum HOM05D000095 ORTHO05D011717 1.5e-27 126.7 79 88.6
PGSC0003DMG400027794 Solanum tuberosum HOM05D000095 ORTHO05D011717 9.5e-22 107.5 89 71.9
PGSC0003DMG400034516 Solanum tuberosum HOM05D000095 ORTHO05D011717 5.6e-14 81.6 86 60.5
Sopen11g021820 Solanum pennellii HOM05D000095 ORTHO05D011717 4.7e-13 78.6 87 59.8
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 8.1e-13 77.8 45 93.3
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.4e-12 77.0 70 65.7
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.4e-12 77.0 70 65.7
Sopen10g012550 Solanum pennellii HOM05D000095 ORTHO05D011717 4.0e-12 75.5 87 57.5
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 8.9e-12 74.3 70 64.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 8.9e-12 74.3 70 64.3
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 8.9e-12 74.3 70 64.3
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 8.9e-12 74.3 40 97.5
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 2.0e-11 73.2 70 62.9
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 2.6e-11 72.8 70 62.9
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 2.6e-11 72.8 70 62.9
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 2.6e-11 72.8 70 60.0
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 2.6e-11 72.8 70 61.4
CAN.G255.21 Capsicum annuum HOM05D000095 ORTHO05D011717 3.4e-11 72.4 86 57.0
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 3.4e-11 72.4 70 61.4
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.4e-11 72.4 83 54.2
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 4.4e-11 72.0 70 61.4
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 4.4e-11 72.0 70 60.0
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 7.6e-11 71.2 39 89.7
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 7.6e-11 71.2 70 60.0
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 7.6e-11 71.2 70 60.0
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 7.6e-11 71.2 40 90.0
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 9.9e-11 70.9 40 92.5
Solyc11g050730.1 Solanum lycopersicum HOM05D000095 ORTHO05D011717 9.9e-11 70.9 75 60.0
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.3e-10 70.5 70 58.6
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.3e-10 70.5 48 79.2
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.3e-10 70.5 70 58.6
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.3e-10 70.5 70 60.0
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.7e-10 70.1 70 58.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.7e-10 70.1 40 90.0
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.7e-10 70.1 70 58.6
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.7e-10 70.1 70 58.6
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.7e-10 70.1 70 58.6
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 1.7e-10 70.1 70 58.6
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 2.2e-10 69.7 73 56.2
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.2e-10 69.7 40 87.5
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.2e-10 69.7 40 87.5
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.2e-10 69.7 71 59.2
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.2e-10 69.7 40 87.5
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 2.2e-10 69.7 44 84.1
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 2.2e-10 69.7 70 58.6
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.2e-10 69.7 70 58.6
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.2e-10 69.7 40 87.5
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.9e-10 69.3 70 57.1
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 2.9e-10 69.3 70 58.6
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.9e-10 69.3 70 57.1
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.8e-10 68.9 70 58.6
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 3.8e-10 68.9 70 58.6
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 3.8e-10 68.9 70 58.6
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.8e-10 68.9 70 58.6
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 57.1
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 57.1
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 58.6
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 58.6
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 58.6
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 4.9e-10 68.6 70 58.6
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 6.4e-10 68.2 70 57.1
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.4e-10 68.2 70 58.6
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 6.4e-10 68.2 70 58.6
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 6.4e-10 68.2 70 57.1
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 6.4e-10 68.2 73 53.4
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 6.4e-10 68.2 70 57.1
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 8.4e-10 67.8 40 85.0
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 55.7
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 8.4e-10 67.8 72 54.2
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 8.4e-10 67.8 85 49.4
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 8.4e-10 67.8 40 85.0
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 8.4e-10 67.8 70 57.1
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.1e-09 67.4 70 55.7
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.1e-09 67.4 70 57.1
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.1e-09 67.4 70 55.7
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.1e-09 67.4 40 82.5
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.1e-09 67.4 70 55.7
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 55.7
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 55.7
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 55.7
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 1.4e-09 67.0 70 57.1
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.4e-09 67.0 73 53.4
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.9e-09 66.6 70 55.7
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.9e-09 66.6 70 57.1
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.9e-09 66.6 70 57.1
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.9e-09 66.6 70 55.7
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 2.4e-09 66.2 52 67.3
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 3.2e-09 65.9 70 55.7
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.1e-09 65.5 40 82.5
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 4.1e-09 65.5 70 55.7
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 4.1e-09 65.5 70 55.7
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 4.1e-09 65.5 70 54.3
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 5.4e-09 65.1 52 65.4
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 9.2e-09 64.3 73 50.7
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.2e-08 63.9 70 51.4
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.2e-08 63.9 70 51.4
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.6e-08 63.5 51 66.7
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 2.7e-08 62.8 39 79.5
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 3.5e-08 62.4 44 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.3e-07 60.5 39 69.2
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 2.5e-06 56.2 71 49.3
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 7.3e-06 54.7 39 69.2
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 7.3e-06 54.7 39 61.5
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 7.3e-06 54.7 39 61.5


User provided reference genes

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