Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.3e-107 393.3 221 100.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.2e-102 376.7 221 92.8
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.7e-86 322.4 170 95.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.9e-65 251.5 227 64.3
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.7e-60 235.0 229 58.5
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.5e-57 225.3 228 65.4
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 4.9e-43 178.7 219 47.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.9e-43 178.7 213 50.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.4e-42 175.3 214 50.9
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.7e-41 172.9 229 51.1
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.9e-41 171.8 223 50.2
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 5.9e-41 171.8 235 48.1
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-40 171.0 212 49.1
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.3e-40 169.9 233 48.9
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.0e-40 168.7 225 46.7
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.0e-40 168.7 214 47.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.6e-40 168.3 215 45.1
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 8.6e-40 167.9 224 46.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.9e-39 166.8 224 44.6
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.5e-39 166.4 208 47.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.3e-39 166.0 221 47.5
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 7.3e-39 164.9 217 42.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.6e-38 162.5 222 49.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.7e-38 162.2 213 44.6
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-36 157.5 216 43.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-36 156.8 214 43.5
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.0e-36 156.8 245 41.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.6e-36 156.4 226 44.2
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.4e-36 155.6 218 47.2
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.7e-36 155.2 227 44.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.7e-35 153.7 220 44.1
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.7e-35 153.7 231 49.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 3.7e-35 152.5 231 43.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 3.7e-35 152.5 216 44.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 4.9e-35 152.1 236 45.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.9e-35 152.1 229 45.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.4e-35 151.8 225 46.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.4e-35 151.8 225 46.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 6.4e-35 151.8 217 45.6
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.4e-35 151.8 222 52.7
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.1e-34 151.0 222 42.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.2e-34 149.4 222 42.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.1e-34 149.1 221 44.3
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 4.1e-34 149.1 185 46.5
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.4e-34 148.7 224 45.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.2e-34 147.9 220 42.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-33 147.1 221 42.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-33 147.1 221 42.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-33 147.1 221 42.1
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.6e-33 147.1 221 44.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-33 146.7 225 44.9
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.7e-33 146.4 223 44.4
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-33 146.0 221 43.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.5e-33 146.0 221 43.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.6e-33 145.6 214 45.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.6e-33 145.6 214 44.9
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.6e-33 145.6 214 43.9
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 7.8e-33 144.8 229 41.5
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.8e-33 144.8 214 44.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 7.8e-33 144.8 213 41.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.8e-33 144.8 234 48.3
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-32 144.4 228 43.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.3e-32 144.1 216 44.9
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.7e-32 143.7 217 47.5
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-32 143.3 224 42.4
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-32 143.3 224 42.4
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.3e-32 143.3 214 44.4
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-32 141.7 224 42.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-32 141.7 224 42.0
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-32 141.7 222 43.2
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.6e-32 141.7 224 42.0
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 6.6e-32 141.7 222 43.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 6.6e-32 141.7 222 43.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 8.6e-32 141.4 224 42.9
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 8.6e-32 141.4 224 42.9
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-31 141.0 152 54.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.1e-31 141.0 224 42.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.5e-31 140.6 213 44.1
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-31 140.2 224 41.5
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.5e-31 139.8 208 46.2
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.5e-31 139.8 219 46.1
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 3.3e-31 139.4 210 46.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.3e-31 139.4 228 43.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 7.3e-31 138.3 210 41.9
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 7.3e-31 138.3 221 40.7
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 7.3e-31 138.3 228 48.7
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.3e-31 138.3 224 44.2
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 9.5e-31 137.9 239 46.0
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 9.5e-31 137.9 239 46.0
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 9.5e-31 137.9 225 44.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.5e-31 137.9 224 44.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.2e-30 137.5 221 42.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-30 137.5 192 46.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.6e-30 137.1 213 43.2
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-30 137.1 213 41.3
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.1e-30 136.7 224 50.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.8e-30 136.3 210 51.4
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-30 135.6 224 43.8
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 6.2e-30 135.2 221 39.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 8.0e-30 134.8 213 42.3
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.0e-30 134.8 212 41.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-29 133.7 228 43.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.3e-29 133.3 215 41.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.0e-29 132.5 215 40.0
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 5.2e-29 132.1 217 43.3
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.9e-29 131.3 218 39.4
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 8.9e-29 131.3 202 44.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 8.9e-29 131.3 219 48.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-28 131.0 223 47.1
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.2e-28 131.0 230 38.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-28 130.2 228 46.9
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.0e-28 130.2 250 42.4
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.6e-28 129.8 227 48.0
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.6e-28 129.8 211 45.0
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.9e-27 126.3 212 44.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-27 126.3 215 45.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-26 124.4 213 41.8
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.1e-26 122.5 204 40.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.4e-26 122.1 221 43.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 9.2e-26 121.3 214 47.2
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.2e-25 120.9 246 34.6
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-25 120.9 179 38.5
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.0e-25 120.2 209 38.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.0e-24 117.9 211 40.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.0e-24 116.3 197 42.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.0e-24 116.3 186 41.4
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.0e-24 115.5 213 41.3
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.6e-24 114.8 186 43.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-23 114.4 185 42.7
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.5e-23 113.2 179 40.2
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.6e-22 110.5 191 36.1
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.1e-22 110.2 198 40.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.6e-22 109.4 197 38.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 6.2e-22 108.6 249 33.7
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 8.1e-22 108.2 197 41.6
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 8.1e-22 108.2 247 39.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-21 107.8 220 39.1
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 6.8e-21 105.1 214 34.6
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 6.8e-21 105.1 220 31.4
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.8e-20 101.3 191 37.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.4e-18 96.7 202 33.7
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.4e-18 96.7 223 31.8
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 5.4e-18 95.5 127 43.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.1e-18 95.1 211 32.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.6e-17 94.0 224 32.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.6e-17 94.0 235 34.9
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.3e-15 86.3 211 31.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.3e-15 85.1 151 37.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.5e-15 84.7 138 42.8
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 9.5e-15 84.7 108 45.4
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.6e-14 84.0 219 31.5
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.8e-14 83.2 225 31.6
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.4e-13 80.9 132 42.4
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-13 79.7 195 31.8
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-13 79.7 195 31.8
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.0e-13 79.3 195 31.3
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-12 76.6 187 30.5
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-12 76.6 187 30.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.3e-11 74.3 200 31.0
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.9e-10 70.5 184 29.9
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 3.2e-10 69.7 61 55.7
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 5.4e-10 68.9 257 30.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.7e-09 66.6 216 29.2
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.5e-09 66.2 147 29.9
CAN.G17.22 Capsicum annuum HOM05D000434 ORTHO05D005487 4.6e-09 65.9 47 76.6
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.0e-09 65.5 125 35.2
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 6.0e-09 65.5 104 38.5
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 7.8e-09 65.1 104 39.4
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.7e-08 63.9 180 29.4
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 9.6e-07 58.2 185 33.0


User provided reference genes

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