Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.1e-220 770.0 480 100.0
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 7.4e-214 747.3 480 96.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.0e-175 620.5 432 81.9
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.3e-125 454.1 357 75.4
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 6.1e-91 339.0 433 54.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 3.0e-90 336.7 431 51.5
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 9.1e-87 325.1 436 50.7
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.5e-84 315.8 441 48.1
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.2e-83 314.7 443 48.1
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 2.3e-82 310.5 466 48.5
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 9.8e-81 305.1 432 48.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 3.7e-80 303.1 438 46.3
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.8e-80 302.8 443 47.2
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.8e-79 300.8 417 47.0
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.1e-79 299.7 435 49.9
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.3e-77 294.7 462 45.5
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.3e-77 294.7 431 49.9
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.2e-77 293.9 443 47.0
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.2e-76 289.7 441 45.1
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.6e-75 286.6 467 43.0
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 6.1e-75 285.8 437 47.8
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.0e-74 285.0 437 48.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.3e-74 283.9 439 44.4
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.5e-73 281.2 440 45.9
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.0e-73 280.8 449 47.9
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.6e-73 280.4 460 46.7
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.6e-73 280.4 420 46.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.3e-72 278.1 446 47.5
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 3.7e-72 276.6 437 44.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.7e-72 276.6 441 47.4
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 4.9e-72 276.2 443 42.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 4.9e-72 276.2 441 47.2
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 6.3e-72 275.8 446 47.1
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 5.4e-71 272.7 432 46.5
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.5e-70 270.0 432 45.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 5.9e-70 269.2 429 42.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.7e-69 267.7 448 43.1
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.3e-69 267.3 437 44.2
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 2.3e-69 267.3 478 41.6
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.1e-68 265.0 435 45.3
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.5e-68 264.6 417 43.9
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.3e-68 263.1 446 46.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.6e-67 261.2 434 43.8
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.6e-67 261.2 427 43.3
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 8.0e-67 258.8 436 45.6
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.8e-66 257.7 438 44.1
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.0e-66 256.5 539 38.2
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 5.2e-66 256.1 477 42.6
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.6e-65 253.8 421 43.0
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.4e-65 253.4 447 39.6
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 7.5e-65 252.3 445 44.9
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 7.5e-65 252.3 458 44.3
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.3e-64 251.5 510 40.6
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.7e-64 251.1 429 42.0
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.7e-64 251.1 480 42.9
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.7e-64 251.1 431 40.8
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 2.9e-64 250.4 443 39.7
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 3.7e-64 250.0 397 45.6
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 8.3e-64 248.8 388 45.9
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.3e-64 248.8 427 45.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.1e-63 248.4 445 43.1
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.1e-63 248.4 439 46.2
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.1e-63 246.5 441 43.8
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.6e-62 244.6 445 42.7
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.0e-61 241.9 430 40.0
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 2.3e-61 240.7 427 44.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 3.9e-61 240.0 437 42.3
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.6e-61 239.2 420 42.9
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.1e-60 238.4 415 46.0
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.9e-60 237.7 426 41.3
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.5e-60 237.3 424 39.9
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.5e-60 237.3 419 44.2
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.3e-60 236.9 421 41.1
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.3e-60 236.5 424 43.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.3e-60 236.5 438 44.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 4.3e-60 236.5 431 42.9
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.3e-60 235.7 438 44.5
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 6.2e-59 232.6 428 40.4
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.4e-58 231.5 432 44.2
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 6.8e-58 229.2 416 43.0
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.5e-57 228.0 394 41.9
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 5.8e-57 226.1 441 42.6
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 5.8e-57 226.1 441 39.9
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 8.3e-56 222.2 456 38.8
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 8.3e-56 222.2 428 39.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.1e-55 221.9 426 37.8
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.9e-55 221.1 267 56.2
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.4e-55 220.7 421 39.7
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.4e-55 220.7 428 38.3
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 7.0e-55 219.2 416 38.9
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.0e-54 217.6 419 40.6
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 3.5e-54 216.9 426 39.2
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.5e-54 216.9 430 37.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 6.0e-54 216.1 454 37.0
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 6.0e-54 216.1 390 45.1
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 6.6e-53 212.6 568 37.7
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-52 211.8 409 39.6
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 7.3e-52 209.1 319 45.5
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.1e-51 207.6 460 41.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 6.8e-50 202.6 390 42.8
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.8e-50 202.6 421 39.9
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.2e-49 201.8 269 49.1
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.4e-49 199.9 414 38.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.8e-49 199.5 415 39.8
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.4e-47 194.1 417 36.9
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.2e-47 193.7 326 43.6
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 6.0e-46 189.5 426 36.9
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 6.6e-45 186.0 329 41.3
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.1e-42 177.2 398 41.2
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 6.8e-42 176.0 401 33.4
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.7e-40 171.4 385 44.4
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.4e-39 167.5 391 35.3
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.0e-33 147.9 365 38.1
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 7.6e-33 146.0 276 42.0
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 7.8e-30 136.0 459 29.2
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.3e-28 130.6 441 32.4
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.3e-27 128.6 129 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 4.8e-27 126.7 473 28.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.4e-25 120.6 309 35.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.2e-24 117.9 275 34.9
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.4e-23 115.2 417 27.3
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.9e-23 114.8 197 41.1
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.9e-23 114.8 215 40.5
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.9e-18 96.3 69 75.4
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.0e-18 95.9 70 74.3
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.4e-17 94.0 168 42.9
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.8e-17 93.2 397 25.4
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.2e-16 91.3 146 45.9
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 2.2e-16 91.3 409 27.1
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 8.4e-16 89.4 99 45.5
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.9e-14 82.8 77 53.2
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.3e-13 82.0 173 35.3
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 8.1e-11 72.8 66 56.1
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.4e-10 72.0 68 55.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 2.1e-06 58.2 334 30.5
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.7e-06 57.8 57 50.9
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 4.6e-06 57.0 67 49.3


User provided reference genes

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