Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 1.5e-59 232.6 120 100.0
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.3e-58 229.6 120 99.2
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.1e-52 209.9 120 90.0
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 5.9e-43 177.6 120 75.0
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 1.0e-42 176.8 120 72.5
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 2.8e-37 158.7 102 75.5
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.6e-27 126.3 122 58.2
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 3.8e-26 121.7 121 56.2
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 5.0e-26 121.3 120 53.3
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 1.5e-25 119.8 120 55.8
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 4.2e-25 118.2 120 55.0
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 5.5e-25 117.9 119 51.3
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 7.2e-25 117.5 120 50.8
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 7.2e-25 117.5 120 50.0
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 9.4e-25 117.1 120 50.0
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 9.4e-25 117.1 120 54.2
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 1.6e-24 116.3 121 51.2
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 2.1e-24 115.9 120 53.3
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 3.6e-24 115.2 121 56.2
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 3.6e-24 115.2 120 52.5
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 4.7e-24 114.8 93 55.9
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 4.7e-24 114.8 117 50.4
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 6.1e-24 114.4 120 51.7
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 1.4e-23 113.2 120 50.8
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 1.8e-23 112.8 121 52.9
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 1.8e-23 112.8 122 51.6
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.2e-22 110.2 119 45.4
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 2.6e-22 109.0 121 52.1
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 4.4e-22 108.2 102 52.0
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 7.5e-22 107.5 121 50.4
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 7.5e-22 107.5 120 48.3
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 1.7e-21 106.3 122 51.6
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.7e-21 106.3 121 50.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 2.8e-21 105.5 115 42.6
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 3.7e-21 105.1 102 52.0
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 6.3e-21 104.4 99 52.5
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 6.3e-21 104.4 120 49.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 8.3e-21 104.0 99 53.5
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 8.3e-21 104.0 111 49.5
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.1e-20 103.6 120 46.7
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.1e-20 103.6 105 54.3
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 1.4e-20 103.2 112 43.8
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 1.4e-20 103.2 97 49.5
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 1.4e-20 103.2 99 55.6
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 2.4e-20 102.4 120 43.3
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.1e-20 102.1 91 54.9
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 3.1e-20 102.1 122 48.4
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 7.0e-20 100.9 114 45.6
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 9.1e-20 100.5 101 51.5
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.2e-19 100.1 95 54.7
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.6e-19 99.8 112 47.3
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 1.6e-19 99.8 112 47.3
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 1.6e-19 99.8 111 51.4
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 1.6e-19 99.8 120 46.7
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 1.6e-19 99.8 121 43.8
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 2.0e-19 99.4 121 49.6
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 2.0e-19 99.4 120 41.7
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 2.0e-19 99.4 95 52.6
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 2.7e-19 99.0 105 51.4
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 2.7e-19 99.0 105 53.3
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 2.7e-19 99.0 105 53.3
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 3.5e-19 98.6 111 49.5
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 4.5e-19 98.2 94 53.2
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 1.0e-18 97.1 111 49.5
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 2.2e-18 95.9 93 46.2
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 2.9e-18 95.5 111 48.6
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 3.8e-18 95.1 105 43.8
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 5.0e-18 94.7 101 50.5
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 5.0e-18 94.7 101 50.5
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 5.0e-18 94.7 95 54.7
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 6.5e-18 94.4 101 50.5
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 8.5e-18 94.0 100 51.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 8.5e-18 94.0 94 52.1
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 1.9e-17 92.8 102 52.0
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 1.9e-17 92.8 100 48.0
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.5e-17 92.4 115 43.5
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 2.5e-17 92.4 62 77.4
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 2.5e-17 92.4 86 52.3
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 9.4e-17 90.5 113 46.9
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 9.4e-17 90.5 100 48.0
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.2e-16 90.1 102 50.0
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.2e-16 90.1 102 50.0
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 1.2e-16 90.1 102 49.0
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.2e-16 90.1 118 45.8
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 2.7e-16 89.0 103 49.5
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 2.7e-16 89.0 112 47.3
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 8.0e-16 87.4 102 49.0
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 2.3e-15 85.9 90 46.7
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 1.2e-14 83.6 113 41.6
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 3.4e-14 82.0 96 47.9
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.7e-14 81.3 97 44.3
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.7e-14 81.3 97 45.4
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.2e-13 79.3 97 44.3
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.2e-13 79.3 97 44.3
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 2.8e-13 79.0 79 48.1
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 2.8e-13 79.0 109 42.2
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.1e-12 77.0 74 54.1
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 1.2e-11 73.6 91 39.6
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 2.7e-11 72.4 97 43.3
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 8.6e-10 67.4 95 40.0
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 4.2e-09 65.1 74 44.6
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 4.2e-09 65.1 74 44.6
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 1.0e-07 60.5 89 42.7
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 5.7e-06 54.7 63 49.2
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 7.5e-06 54.3 36 61.1


User provided reference genes

Program Settings