Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 0.0e+00 1097.0 553 100.0
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.5e-282 975.7 497 98.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 4.9e-278 960.7 554 87.7
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 6.7e-275 950.3 497 96.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 8.8e-243 843.6 527 80.8
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.9e-238 828.6 515 81.0
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.5e-237 824.3 546 75.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.7e-236 821.2 545 76.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 2.3e-235 818.9 546 74.9
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.2e-235 817.8 543 76.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.7e-235 817.4 546 74.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 4.2e-229 798.1 543 74.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.6e-228 796.2 539 75.1
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 6.1e-228 794.3 546 74.2
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.6e-226 788.9 542 74.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 5.7e-226 787.7 535 74.4
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 7.5e-226 787.3 541 72.8
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 7.5e-226 787.3 545 73.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.3e-225 786.6 536 73.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.8e-224 782.7 535 73.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.0e-224 780.8 535 74.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.2e-223 780.0 546 71.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.6e-223 779.6 542 74.0
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.0e-223 779.2 549 72.9
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.5e-223 778.5 546 71.6
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.5e-223 778.1 539 73.8
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.0e-222 776.9 544 72.2
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.3e-222 776.5 534 74.5
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.9e-222 775.4 545 71.2
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.8e-222 775.0 539 71.1
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.5e-221 771.2 546 70.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.6e-220 769.6 526 73.8
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.6e-220 768.5 544 71.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 8.0e-220 767.3 535 72.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 8.0e-220 767.3 527 72.9
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.4e-219 766.5 543 70.7
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-219 766.1 544 72.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-219 766.1 544 72.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-219 766.1 544 72.6
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.3e-219 765.8 537 73.0
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-219 765.0 541 70.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 4.0e-219 765.0 546 70.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.0e-219 765.0 541 70.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-218 763.1 544 72.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.6e-218 762.3 526 73.0
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 4.4e-218 761.5 484 78.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 7.5e-218 760.8 542 72.5
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.8e-217 758.8 541 71.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 2.8e-217 758.8 541 71.9
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.1e-216 755.4 527 72.3
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.1e-216 755.4 531 71.9
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.5e-215 751.5 527 71.9
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 4.5e-215 751.5 513 72.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.0e-214 750.4 542 70.8
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.9e-214 748.8 529 72.0
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-213 746.5 542 70.7
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.9e-213 746.1 540 70.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.5e-213 745.7 542 70.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.5e-213 745.7 542 70.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.2e-213 745.0 542 71.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 5.5e-213 744.6 542 70.8
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 7.2e-213 744.2 531 69.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.2e-212 743.4 539 70.7
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.6e-212 743.0 539 67.9
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.1e-212 742.7 541 71.0
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.8e-212 742.3 530 70.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-212 741.9 542 69.9
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.4e-211 740.0 542 70.1
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.4e-211 740.0 542 70.1
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-211 739.2 542 69.9
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.3e-211 739.2 495 74.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 3.0e-211 738.8 542 69.7
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.0e-211 738.8 530 68.9
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.0e-211 738.8 529 69.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 5.2e-211 738.0 539 70.1
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 8.9e-211 737.3 544 68.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-210 736.5 538 70.1
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.4e-210 734.9 530 68.7
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 9.8e-210 733.8 544 68.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.2e-209 732.6 544 67.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.8e-209 732.3 544 68.8
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.8e-209 732.3 474 76.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.4e-208 729.9 547 67.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.6e-207 726.5 541 67.1
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.7e-207 725.7 544 66.4
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.5e-207 724.9 543 68.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-206 723.4 546 68.3
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.3e-206 722.6 548 67.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.9e-206 721.8 548 65.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.5e-205 719.2 544 65.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 7.3e-205 717.6 544 64.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 6.1e-204 714.5 540 66.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-203 713.8 538 66.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-203 713.8 534 67.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-203 713.4 544 64.3
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.8e-203 713.0 532 68.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 3.1e-203 712.2 538 66.4
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.6e-202 709.1 529 66.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.2e-201 706.1 530 65.8
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.0e-198 697.2 546 66.1
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.3e-198 696.0 461 76.1
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.0e-198 695.7 555 63.8
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.0e-198 695.7 535 67.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.2e-196 690.3 520 66.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.8e-195 684.5 447 76.1
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.2e-194 683.7 532 66.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.7e-193 678.7 471 70.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.1e-192 675.2 482 69.3
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.7e-191 672.5 541 61.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.1e-182 641.7 540 59.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.1e-180 636.3 438 72.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 2.8e-180 636.0 526 60.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.2e-178 630.6 542 58.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.6e-178 627.9 551 57.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.6e-175 618.6 414 73.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.4e-171 606.3 396 74.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.4e-170 602.1 536 58.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 5.8e-170 601.7 396 76.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.5e-165 586.3 531 58.2
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.6e-165 585.1 471 62.4
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.8e-158 563.5 402 68.9
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.7e-151 539.7 390 67.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.8e-145 519.2 323 78.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 8.4e-145 518.1 372 69.4
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.8e-131 473.8 359 66.9
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.1e-131 471.5 340 68.5
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.9e-129 466.5 473 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 8.5e-129 464.9 558 45.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.1e-127 458.8 464 49.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 7.0e-115 418.7 258 82.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.9e-113 413.3 513 42.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 4.8e-108 396.0 517 40.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.4e-101 372.9 227 82.4
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-69 268.1 200 66.5
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.1e-67 261.9 180 73.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-63 248.4 152 82.9
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.9e-62 242.3 197 63.5
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 6.4e-60 236.1 173 66.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.8e-53 213.0 149 74.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.4e-46 191.0 137 69.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 2.2e-44 184.5 159 61.0
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 8.4e-44 182.6 170 55.9
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 7.4e-40 169.5 140 61.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.0e-33 149.1 96 75.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 8.7e-33 146.0 150 52.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.5e-27 126.7 110 58.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 5.3e-22 110.2 71 74.6
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.2e-19 100.5 502 24.5
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 6.1e-18 96.7 75 65.3
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 6.7e-17 93.2 496 24.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.9e-13 80.1 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.9e-13 80.1 67 55.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.0e-08 65.1 46 67.4
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.7e-07 60.8 46 60.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.7e-07 60.8 45 60.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.8e-07 60.5 46 58.7


User provided reference genes

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