Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.3e-258 894.4 421 100.0
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 1.1e-256 889.4 421 99.0
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.5e-245 850.5 419 93.3
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.7e-244 848.2 419 93.3
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.0e-238 829.7 422 91.5
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 9.3e-237 823.2 504 80.2
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.4e-229 799.3 459 81.9
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 4.2e-221 771.2 419 83.8
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 5.3e-216 754.2 418 82.5
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 2.0e-215 752.3 419 80.7
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 5.9e-215 750.7 419 81.6
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.2e-214 748.8 420 81.0
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 6.5e-214 747.3 421 80.5
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 1.1e-213 746.5 419 80.7
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 4.7e-212 741.1 418 79.4
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.8e-211 739.2 413 81.1
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.3e-211 738.8 421 79.8
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.3e-211 738.8 418 80.6
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.0e-211 738.4 418 81.1
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 6.7e-211 737.3 418 79.9
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 6.7e-211 737.3 417 80.6
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 8.8e-211 736.9 418 80.1
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.2e-210 736.5 418 79.7
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.2e-210 736.5 421 80.3
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 2.0e-210 735.7 418 78.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.4e-210 734.6 419 79.0
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 4.4e-210 734.6 419 78.5
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 7.5e-210 733.8 419 79.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-209 733.0 417 78.9
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.3e-209 733.0 421 79.6
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.3e-209 733.0 418 78.9
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 6.3e-209 730.7 400 83.2
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 8.2e-209 730.3 419 79.0
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.4e-208 729.6 417 79.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.4e-208 729.6 418 79.4
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.4e-208 729.6 421 78.9
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.1e-208 728.4 418 78.9
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 9.1e-208 726.9 419 78.3
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.2e-207 726.5 419 78.5
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 2.0e-207 725.7 417 79.9
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.7e-207 725.3 418 79.2
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 4.5e-207 724.5 418 78.0
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 4.5e-207 724.5 420 78.8
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.9e-207 724.2 417 78.4
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 7.7e-207 723.8 419 78.8
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 2.9e-206 721.8 417 78.4
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 8.5e-206 720.3 419 78.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.1e-205 719.9 418 78.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.1e-205 719.9 448 74.6
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.1e-205 719.9 448 74.6
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.5e-205 719.5 418 76.8
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 3.2e-205 718.4 417 77.5
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 7.2e-205 717.2 418 76.6
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 7.2e-205 717.2 417 77.2
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 2.7e-204 715.3 417 77.2
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 3.6e-204 714.9 418 77.0
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 4.7e-204 714.5 420 77.6
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 1.0e-203 713.4 417 77.0
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.8e-203 712.6 417 76.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 5.2e-203 711.1 417 78.7
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.8e-203 710.7 417 77.5
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.8e-203 710.7 417 77.2
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.6e-202 708.8 420 77.1
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.6e-202 708.8 422 77.3
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.4e-202 708.4 417 77.0
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 4.4e-202 708.0 452 72.3
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.3e-201 706.4 424 77.4
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 1.7e-201 706.1 417 76.5
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.7e-201 706.1 422 77.0
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.7e-201 706.1 417 77.0
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.7e-201 706.1 421 75.1
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 6.3e-201 704.1 417 76.0
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 6.3e-201 704.1 416 75.7
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.1e-200 703.4 417 75.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.8e-200 702.6 417 76.0
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-200 702.2 417 76.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.1e-200 701.8 419 77.8
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.1e-200 701.4 417 76.5
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 9.1e-200 700.3 395 79.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 1.2e-199 699.9 419 75.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 2.0e-199 699.1 416 75.2
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.7e-199 698.7 419 77.3
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 3.5e-199 698.4 420 75.5
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 4.5e-199 698.0 416 76.0
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 7.7e-199 697.2 417 75.3
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 2.3e-198 695.7 429 75.3
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 6.5e-198 694.1 417 74.8
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 5.5e-197 691.0 420 76.9
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 7.2e-197 690.6 417 74.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.6e-196 688.3 456 71.1
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 4.7e-196 688.0 397 80.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 1.4e-195 686.4 404 77.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.8e-195 686.0 412 77.2
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 2.3e-195 685.6 403 77.2
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.3e-195 685.6 397 78.3
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 4.0e-195 684.9 404 77.2
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 1.2e-194 683.3 403 76.9
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.4e-192 676.4 425 72.5
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.1e-192 675.2 426 72.8
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 7.0e-192 674.1 384 79.9
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 3.8e-190 668.3 422 73.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 2.5e-189 665.6 431 72.4
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 3.6e-188 661.8 432 72.5
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.3e-187 659.1 420 70.0
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 3.4e-186 655.2 419 69.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 4.9e-185 651.4 456 68.4
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.2e-183 646.7 418 72.7
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.2e-178 630.2 401 73.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 1.2e-178 630.2 415 72.5
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.2e-164 583.6 421 67.2
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.8e-163 579.7 418 64.4
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.8e-161 572.0 371 72.2
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 6.4e-161 571.2 417 64.7
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 4.1e-160 568.5 416 61.3
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.5e-157 560.1 421 64.6
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 3.3e-157 558.9 300 82.0
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 7.3e-157 557.8 358 69.8
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.8e-154 548.1 419 61.6
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.4e-152 542.7 440 61.6
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 7.4e-141 504.6 359 64.9
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 9.6e-141 504.2 424 55.4
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 9.6e-133 477.6 275 78.9
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.6e-127 460.3 465 52.5
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 4.6e-127 458.8 466 52.6
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 4.5e-122 442.2 468 47.9
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.9e-120 436.8 470 48.7
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 3.1e-107 392.9 422 48.6
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 5.6e-48 196.1 115 73.9
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 6.2e-31 139.4 104 60.6
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.3e-30 136.3 115 55.7
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 2.6e-29 134.0 89 65.2
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 2.6e-29 134.0 89 65.2
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 4.5e-29 133.3 93 67.7
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.1e-19 99.4 55 76.4
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 3.5e-18 97.1 69 62.3
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.3e-17 95.1 136 41.2
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 2.3e-17 94.4 67 62.7
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.9e-17 93.6 67 61.2
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 2.1e-15 87.8 65 60.0
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.7e-08 63.2 65 47.7
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 1.1e-06 58.9 25 96.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.8e-06 58.2 121 32.2
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 4.1e-06 57.0 36 61.1


User provided reference genes

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