Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.1e-83 313.2 142 100.0
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.1e-83 311.6 142 99.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 4.0e-83 311.2 142 99.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.2e-79 299.7 142 94.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.6e-79 297.7 143 94.4
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.7e-76 288.1 142 89.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.7e-70 267.3 137 83.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-69 266.5 181 70.7
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.9e-69 265.8 134 82.8
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.1e-68 262.3 142 81.0
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 2.4e-67 258.8 135 82.2
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 6.9e-67 257.3 135 81.5
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 6.9e-67 257.3 142 78.9
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 9.0e-67 256.9 142 78.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.0e-66 255.8 134 81.3
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-66 255.4 134 82.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 4.5e-66 254.6 142 76.8
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 81.3
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 82.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 7.6e-66 253.8 134 80.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.6e-66 253.8 141 77.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.7e-65 252.7 134 79.1
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.2e-65 252.3 141 76.6
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.9e-65 251.9 134 78.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.9e-65 251.1 141 75.9
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 6.5e-65 250.8 141 77.3
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.5e-65 250.8 134 79.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.1e-64 250.0 134 79.9
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.4e-64 249.6 134 79.9
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.2e-64 248.1 134 79.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.2e-64 248.1 134 77.6
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 5.5e-64 247.7 134 79.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 9.3e-64 246.9 135 80.7
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.2e-63 246.5 142 75.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.1e-63 245.7 134 76.9
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.7e-63 245.4 141 73.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.7e-63 245.4 134 77.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 3.5e-63 245.0 133 77.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.5e-63 245.0 142 75.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.0e-62 243.4 130 79.2
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 76.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 76.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.3e-62 243.0 133 76.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.8e-62 242.7 142 73.2
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.8e-62 242.7 134 78.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.8e-62 242.7 134 74.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.8e-62 242.7 139 73.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 75.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 76.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.0e-62 241.9 134 76.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 3.9e-62 241.5 128 80.5
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 75.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.9e-62 241.5 136 75.7
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 76.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 6.7e-62 240.7 134 74.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 6.7e-62 240.7 138 73.9
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.1e-61 240.0 134 76.9
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 73.3
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-61 240.0 134 73.9
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-61 240.0 134 74.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 75.4
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 74.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-61 239.6 123 81.3
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.3e-61 238.4 134 76.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.3e-61 238.4 127 78.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.3e-61 238.4 129 79.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-61 238.4 134 75.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 3.3e-61 238.4 138 73.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 74.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 73.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 76.1
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.7e-61 237.7 132 77.3
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.4e-61 237.3 135 74.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.4e-61 237.3 134 73.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 9.7e-61 236.9 134 76.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.3e-60 236.5 136 74.3
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.3e-60 236.5 134 75.4
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-60 235.7 134 73.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-60 235.7 134 75.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 75.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.7e-60 235.0 134 75.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 4.8e-60 234.6 134 73.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 8.2e-60 233.8 134 72.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.1e-59 233.4 131 76.3
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.1e-59 233.4 131 75.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 75.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 75.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.1e-59 231.5 134 74.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 5.3e-59 231.1 134 71.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 6.9e-59 230.7 134 73.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.9e-59 230.7 126 76.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 9.0e-59 230.3 134 72.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.2e-58 229.9 133 75.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 133 72.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 71.6
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.4e-58 228.4 134 73.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.5e-58 228.0 121 80.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 7.6e-58 227.3 140 69.3
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.0e-57 226.9 133 72.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.0e-57 226.9 133 72.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 72.4
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 72.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.9e-57 225.3 120 81.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.8e-57 224.9 139 71.2
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.8e-57 224.9 133 72.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.0e-57 224.6 132 70.5
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 4.2e-56 221.5 133 71.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 4.2e-56 221.5 121 78.5
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.5e-56 221.1 121 79.3
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.7e-55 218.8 130 72.3
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.9e-55 217.2 130 71.5
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 128 71.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.8e-54 216.1 131 68.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 8.7e-54 213.8 129 69.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.9e-53 212.6 132 69.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.3e-53 211.8 124 70.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.2e-52 209.1 134 67.2
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.8e-52 208.8 124 70.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.8e-52 208.0 120 71.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 4.1e-51 204.9 131 67.2
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 9.1e-51 203.8 126 68.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-50 203.0 116 72.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.5e-50 201.4 130 63.8
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 5.9e-50 201.1 121 70.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 7.7e-50 200.7 129 67.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.3e-49 199.9 129 64.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-48 196.8 134 64.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.6e-47 193.0 133 58.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.1e-47 191.0 130 62.3
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.0e-46 190.3 107 72.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-46 188.7 134 64.9
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.3e-45 185.3 130 60.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 9.7e-45 183.7 101 75.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.8e-43 179.5 135 64.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.1e-43 178.7 96 81.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 6.9e-43 177.6 104 77.9
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 6.9e-43 177.6 83 97.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.9e-41 172.2 128 61.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.2e-40 168.3 132 60.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-38 163.7 132 59.1
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-35 153.3 97 68.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.3e-35 151.4 141 47.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.1e-35 150.6 85 76.5
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.8e-30 136.3 74 82.4
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.1e-27 125.2 112 55.4
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-26 123.2 69 75.4
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-23 113.2 63 79.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-22 109.0 78 62.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.8e-19 99.8 80 56.2


User provided reference genes

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