Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1910.6 1039 100.0
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1866.3 1039 98.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1721.4 1006 89.6
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1626.3 1041 82.9
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1583.2 1039 80.3
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1345.5 931 77.6
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1308.9 1010 66.9
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1288.5 1014 66.8
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1279.6 1003 66.9
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1268.4 1012 65.5
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1249.6 1035 64.5
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1235.3 1009 64.3
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1233.4 997 64.7
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1233.4 1010 65.4
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1221.5 1014 65.3
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1221.1 1036 65.1
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1211.4 944 67.5
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1210.3 1008 63.2
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1209.9 1001 62.4
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1203.7 1003 64.0
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1203.3 1036 62.2
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1199.9 1005 63.5
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1196.4 1010 62.4
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 1008 62.6
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 1010 62.3
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1194.1 1015 63.3
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1194.1 1016 63.8
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1191.8 1001 63.3
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1188.3 1116 58.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1182.9 1008 61.4
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1179.9 988 63.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1179.5 993 63.6
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1177.5 1050 60.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1174.8 1039 60.7
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1167.9 1017 61.9
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1164.8 1006 62.8
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1163.7 1009 60.1
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1161.4 1003 62.3
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 0.0e+00 1159.8 667 93.7
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1159.4 1008 59.8
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1158.7 1042 60.5
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1158.7 1005 61.4
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1156.4 1005 62.1
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1155.6 930 64.1
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1150.6 997 60.5
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1147.9 1013 61.2
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1146.0 1039 60.7
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1145.2 1025 59.9
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1144.4 1000 61.7
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1013 60.2
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1141.7 975 60.8
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1130.9 1002 60.4
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1000 60.7
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1128.6 1010 58.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1127.9 1016 59.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1003 60.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1117.8 1004 60.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1113.6 1007 59.4
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1111.3 1008 59.7
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1108.6 1009 58.6
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1105.5 1016 58.9
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1104.7 1007 58.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1100.9 1006 58.8
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1099.0 1026 59.3
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1096.3 996 58.3
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1018 58.6
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1082.8 1003 58.1
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1079.7 1012 57.7
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1077.8 1015 58.7
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 7.0e-310 1067.4 1013 57.3
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 6.6e-308 1060.8 1001 57.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 6.6e-308 1060.8 1001 57.7
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.8e-306 1055.4 1013 56.6
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 3.6e-306 1055.0 1016 56.8
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.0e-305 1053.5 1016 56.9
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 2.3e-305 1052.4 1018 55.7
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 3.1e-305 1052.0 1012 56.0
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 2.0e-304 1049.3 1008 55.7
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 3.4e-304 1048.5 1012 56.5
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 7.5e-304 1047.3 1012 56.5
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 6.4e-303 1044.3 1005 56.9
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 4.1e-302 1041.6 1037 55.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 3.5e-301 1038.5 1011 56.8
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 6.0e-301 1037.7 1028 55.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.9e-291 1006.1 1002 53.3
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.0e-288 996.1 1009 54.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.9e-287 991.5 1129 51.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.5e-275 952.6 837 58.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 9.0e-273 944.1 747 64.3
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.2e-270 935.3 747 63.7
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.0e-268 929.1 740 63.2
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 7.4e-267 924.5 1004 54.8
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 3.6e-266 922.2 749 62.3
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 2.9e-263 912.5 773 61.2
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.4e-257 893.6 746 61.9
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.8e-236 823.5 1009 49.1
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.7e-235 818.5 630 66.5
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 5.1e-228 795.4 995 46.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.7e-223 780.4 556 69.6
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 2.1e-197 693.7 1004 41.6
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 1.2e-195 688.0 559 61.5
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.0e-192 677.2 603 58.2
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.3e-174 616.7 677 50.7
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 2.3e-172 610.5 902 41.2
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 4.1e-169 599.7 919 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.2e-160 571.6 959 39.1
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.7e-154 551.2 428 65.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 7.4e-142 509.2 634 49.4
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 6.8e-95 353.2 771 37.6
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.8e-92 345.1 296 66.6
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.5e-91 340.9 318 53.8
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.1e-89 335.9 248 67.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.4e-87 328.9 351 53.8
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 5.0e-82 310.5 234 69.7
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 4.1e-76 290.8 387 47.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 5.6e-73 280.4 272 52.6
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-71 274.2 418 38.3
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 4.9e-69 267.3 944 26.8
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.9e-66 257.7 213 58.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.2e-63 247.3 234 57.7
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.3e-61 242.7 896 28.2
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.6e-59 235.7 195 57.4
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 3.4e-46 191.4 247 51.8
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.4e-39 169.5 133 63.9
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.9e-34 151.4 105 70.5
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 8.7e-34 150.2 250 47.2
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 6.5e-21 107.5 64 76.6
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 9.3e-20 103.6 85 60.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 5.1e-18 97.8 68 70.6
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 4.3e-17 94.7 68 67.6
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.9e-15 87.4 67 59.7
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 9.0e-15 87.0 52 78.8
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.6e-14 85.5 683 20.5
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 2.6e-14 85.5 77 58.4
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.4e-09 67.4 57 50.9
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.3e-08 66.6 46 69.6
CAN.G691.3 Capsicum annuum HOM05D005365 ORTHO05D115466 1.1e-07 63.5 66 63.6
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.5e-06 59.7 59 52.5
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.7e-06 57.4 47 53.2


User provided reference genes

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