Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.1e-224 783.1 429 100.0
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 7.1e-224 780.4 429 99.5
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 7.1e-216 753.8 429 97.0
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.1e-203 711.8 430 93.5
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 3.8e-185 651.7 425 87.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.2e-177 625.9 421 85.7
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.7e-161 573.2 421 81.0
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 2.6e-141 506.1 430 70.7
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 1.6e-138 496.9 427 70.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 2.7e-138 496.1 426 70.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.3e-136 489.2 429 68.5
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 7.3e-136 488.0 415 69.9
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.4e-134 483.8 427 68.4
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.3e-134 483.0 431 67.5
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.4e-131 473.0 413 69.2
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.0e-130 469.9 416 68.5
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.3e-129 467.2 439 65.4
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.7e-129 466.8 432 66.2
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.9e-128 463.4 416 67.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.5e-128 463.0 418 68.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 3.6e-127 459.1 431 66.1
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 8.0e-127 458.0 422 65.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.1e-126 457.6 443 63.7
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.8e-126 456.8 438 65.5
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 3.1e-126 456.1 433 66.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 7.5e-125 451.4 430 65.6
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.3e-124 450.7 389 70.2
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.7e-124 450.3 444 65.1
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 2.2e-124 449.9 450 59.6
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.2e-124 449.9 419 66.6
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.4e-123 447.2 416 65.4
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.2e-123 446.0 381 70.1
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.1e-123 445.7 389 69.4
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 7.0e-123 444.9 430 63.7
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.2e-122 444.1 428 63.8
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.2e-122 444.1 411 68.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.7e-121 440.3 416 65.6
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.9e-121 439.1 425 64.5
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 8.6e-121 438.0 434 62.9
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.6e-119 433.7 439 62.6
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.8e-118 430.3 434 62.7
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 5.2e-118 428.7 433 64.4
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 6.8e-118 428.3 414 64.5
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.2e-116 423.3 424 63.7
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 3.7e-116 422.5 326 76.4
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.7e-116 422.5 453 57.0
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.4e-115 420.6 427 62.5
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.9e-115 420.2 419 63.7
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 3.2e-115 419.5 397 65.5
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.2e-115 419.5 419 63.7
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.2e-115 419.5 424 63.0
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.2e-114 417.5 439 62.9
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.3e-113 413.3 380 66.1
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.3e-113 413.3 366 69.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.1e-112 411.0 388 66.2
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.9e-112 410.2 428 61.4
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.5e-112 409.8 372 68.0
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 4.3e-112 409.1 374 66.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 7.3e-112 408.3 427 60.9
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.2e-111 407.5 378 65.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.4e-110 404.1 430 60.2
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.8e-110 403.7 422 61.1
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.8e-110 403.7 355 70.4
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 4.0e-110 402.5 362 69.6
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.2e-110 402.1 406 62.1
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 6.8e-110 401.7 312 76.0
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 7.6e-109 398.3 373 67.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 9.9e-109 397.9 357 70.0
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 9.9e-109 397.9 363 69.4
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 9.9e-109 397.9 413 60.5
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.9e-108 396.4 374 67.4
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 6.4e-108 395.2 365 68.5
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-107 394.4 371 66.0
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.9e-107 393.7 348 70.1
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.9e-107 393.7 348 70.1
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.4e-107 393.3 358 69.8
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.4e-107 393.3 358 69.8
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.4e-107 393.3 348 70.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 5.4e-107 392.1 429 58.0
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 7.8e-106 388.3 471 55.2
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.3e-105 386.7 424 58.7
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.1e-104 384.4 339 70.2
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 2.5e-104 383.3 416 61.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 4.3e-104 382.5 339 70.8
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 5.6e-104 382.1 361 63.2
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.8e-103 379.8 391 61.6
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 6.2e-103 378.6 409 59.7
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.1e-102 377.9 415 58.6
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.4e-102 377.5 384 60.2
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 9.0e-102 374.8 410 60.0
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.2e-101 374.4 410 59.8
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.4e-99 366.7 377 65.3
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 4.2e-99 365.9 398 59.0
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.3e-97 360.9 254 73.6
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.3e-96 355.9 292 65.4
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 3.6e-95 352.8 243 75.7
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 9.9e-93 344.7 308 68.2
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 2.2e-92 343.6 390 57.7
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 3.8e-92 342.8 320 67.5
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 2.5e-83 313.5 410 54.6
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.0e-81 308.1 298 67.4
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.0e-81 308.1 372 56.5
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.5e-80 304.3 303 66.3
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.7e-71 273.1 199 74.9
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 5.9e-69 265.8 421 43.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 5.3e-62 242.7 224 63.4
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 5.1e-57 226.1 257 61.1
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 3.1e-54 216.9 368 42.9
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.5e-52 209.1 233 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.1e-51 208.4 308 46.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.5e-51 207.2 315 49.5
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.6e-50 203.4 131 80.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 4.7e-50 203.0 270 56.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.0e-49 200.3 221 52.0
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.2e-40 171.8 249 51.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.8e-38 164.5 244 41.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.5e-37 159.8 109 77.1
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.6e-34 150.2 208 42.8
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 1.5e-32 144.8 208 55.3
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 3.1e-30 137.1 77 92.2
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 4.3e-19 100.1 60 83.3
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.8e-17 92.8 159 45.9
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 1.0e-12 79.0 137 38.7
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 4.3e-11 73.6 101 49.5
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.6e-11 73.2 98 41.8


User provided reference genes

Program Settings