Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 9.1e-99 363.6 189 100.0
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 9.1e-99 363.6 189 100.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.5e-82 308.1 189 88.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-78 295.4 190 84.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.0e-78 295.0 190 84.7
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.9e-76 288.1 190 84.2
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.9e-64 249.6 185 76.2
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.2e-63 246.9 188 72.9
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.8e-63 245.7 186 73.7
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 3.6e-63 245.4 187 74.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 6.2e-63 244.6 186 73.7
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 8.0e-63 244.2 185 73.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 3.4e-61 238.8 191 73.3
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.3e-60 236.9 188 71.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.9e-60 235.0 199 67.3
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.9e-60 235.0 189 69.3
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 6.4e-60 234.6 186 70.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 8.3e-60 234.2 184 69.6
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.4e-59 233.4 185 69.2
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.4e-59 233.4 184 70.7
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 3.2e-59 232.3 184 71.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 3.2e-59 232.3 191 69.6
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.7e-58 229.2 191 66.0
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 4.6e-58 228.4 184 69.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 4.6e-58 228.4 186 67.7
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.6e-58 228.4 186 68.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 4.6e-58 228.4 186 67.7
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.6e-58 228.4 182 69.8
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.8e-58 227.6 184 67.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.0e-57 225.7 184 67.4
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 6.6e-57 224.6 199 66.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 8.6e-57 224.2 184 68.5
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.6e-57 224.2 187 69.0
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.1e-56 223.8 189 67.2
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.9e-56 223.0 193 69.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.9e-56 223.0 184 70.1
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.6e-56 221.5 189 66.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 7.3e-56 221.1 184 68.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.3e-56 221.1 190 68.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 9.5e-56 220.7 184 66.8
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.2e-55 220.3 184 65.8
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-55 220.3 184 65.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-55 220.3 184 65.2
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-55 220.3 184 65.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.6e-55 219.9 184 64.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.6e-55 219.9 200 63.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.6e-55 219.9 186 65.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 6.2e-55 218.0 185 64.9
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 6.2e-55 218.0 185 64.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-54 216.9 187 64.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-54 216.9 188 64.4
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.8e-54 216.5 186 66.1
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.2e-54 214.9 183 65.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.2e-54 214.9 184 64.7
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 8.9e-54 214.2 183 65.6
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.5e-53 213.4 184 65.8
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.5e-53 213.4 201 63.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-53 213.0 185 65.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.0e-53 213.0 185 65.4
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.0e-53 213.0 185 66.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 2.6e-53 212.6 189 60.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.6e-53 212.6 185 65.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.6e-53 212.6 184 64.1
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.4e-53 212.2 183 64.5
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 5.8e-53 211.5 184 60.9
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.8e-53 211.5 132 81.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 9.9e-53 210.7 183 63.9
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.3e-52 210.3 183 65.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.3e-52 210.3 183 65.6
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.7e-52 209.9 184 66.3
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.7e-52 209.9 187 63.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.7e-52 209.9 150 78.0
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-52 209.5 184 66.3
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.2e-52 209.5 183 61.7
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.9e-52 209.1 194 61.3
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.7e-52 208.8 183 64.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.7e-52 208.8 190 64.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.9e-52 208.4 183 64.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 4.9e-52 208.4 183 65.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 4.9e-52 208.4 183 65.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 4.9e-52 208.4 183 65.0
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 4.9e-52 208.4 180 61.7
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 6.4e-52 208.0 183 63.9
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.4e-51 206.8 184 65.2
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.2e-51 205.7 184 62.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.4e-51 204.9 190 63.7
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.1e-50 203.0 186 61.8
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.1e-50 203.0 186 61.8
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.1e-50 203.0 185 63.2
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.7e-50 202.6 184 61.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.5e-50 202.2 184 61.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.0e-50 201.4 186 61.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.0e-50 201.4 183 63.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.0e-49 200.7 183 62.8
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.0e-49 200.7 202 57.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.0e-49 200.7 137 77.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.3e-49 200.3 183 63.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.7e-49 199.9 183 61.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.7e-49 199.9 188 61.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.3e-49 199.5 186 60.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.5e-48 194.1 186 60.2
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 1.2e-47 193.7 138 74.6
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.8e-47 192.6 185 60.0
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 8.1e-47 191.0 166 69.3
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.4e-46 190.3 197 61.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.4e-46 189.5 179 60.9
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.4e-46 189.5 179 60.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 6.8e-46 188.0 180 59.4
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 4.4e-45 185.3 185 55.7
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 4.4e-45 185.3 183 59.0
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.2e-44 183.0 164 66.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.2e-44 183.0 120 75.0
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.2e-43 179.1 183 59.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 9.2e-43 177.6 179 58.1
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 3.9e-41 172.2 101 86.1
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.3e-40 169.1 186 55.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 4.3e-40 168.7 141 63.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.6e-39 166.8 146 65.8
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 5.3e-38 161.8 198 49.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 4.4e-37 158.7 193 47.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 2.9e-36 156.0 91 83.5
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 3.5e-34 149.1 115 65.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.6e-31 140.2 102 67.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.0e-29 133.3 112 59.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-29 132.9 101 67.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.4e-29 132.5 103 63.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 5.8e-29 131.7 101 66.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 4.9e-28 128.6 136 59.6
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 6.4e-28 128.3 85 75.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.9e-27 126.7 120 55.0
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.2e-26 124.0 138 54.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.6e-26 123.6 126 51.6
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 3.5e-26 122.5 103 62.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 6.7e-25 118.2 102 61.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 4.8e-23 112.1 110 51.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.8e-23 112.1 115 54.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 2.4e-22 109.8 103 57.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.1e-22 109.4 184 43.5
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.3e-22 108.6 103 53.4
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.9e-22 108.2 110 51.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-21 105.5 88 69.3
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.8e-21 105.1 98 54.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.9e-19 100.1 80 60.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.7e-18 96.3 71 63.4
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 3.5e-18 95.9 110 44.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.0e-18 95.1 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.0e-17 92.8 67 71.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.9e-17 92.4 81 60.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.7e-17 91.3 98 45.9
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 9.6e-16 87.8 94 50.0
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 9.6e-16 87.8 124 46.0
CAN.G1581.1 Capsicum annuum HOM05D004626 ORTHO05D005185 6.5e-12 75.1 57 73.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 6.5e-12 75.1 87 40.2
Nitab4.5_0000104g0020 Nicotiana tabacum HOM05D034732 ORTHO05D285139 3.7e-07 59.3 63 54.0


User provided reference genes

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