Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 2.4e-204 715.3 361 100.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 5.4e-201 704.1 362 98.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.8e-196 689.1 362 96.7
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 5.8e-195 684.1 362 94.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 6.4e-194 680.6 362 93.6
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 3.2e-193 678.3 362 93.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.3e-157 560.1 380 73.7
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 8.5e-154 547.4 363 75.2
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 4.2e-153 545.0 364 73.9
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 5.5e-153 544.7 364 74.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.6e-152 542.0 364 73.9
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.0e-151 540.4 362 73.5
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 5.1e-151 538.1 364 71.2
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 8.8e-151 537.3 362 72.9
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.1e-150 537.0 363 72.7
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.4e-150 535.0 364 73.4
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 5.7e-150 534.6 363 71.6
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.3e-149 533.5 366 72.1
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.7e-149 533.1 364 70.9
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.7e-149 533.1 363 71.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.2e-149 532.7 362 72.9
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.2e-149 532.7 385 67.5
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.8e-149 531.6 364 72.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 8.2e-149 530.8 364 71.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.4e-148 530.0 367 71.1
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.4e-148 529.3 364 73.1
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 9.1e-148 527.3 362 70.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.2e-147 526.9 374 71.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-147 526.9 363 71.1
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.6e-147 525.8 364 71.7
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.6e-147 525.8 362 70.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.5e-147 525.4 363 71.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.7e-147 524.2 359 72.7
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.3e-146 523.5 363 71.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.9e-146 522.3 363 70.8
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.8e-146 521.9 359 72.4
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 8.5e-146 520.8 357 70.6
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-145 520.4 364 70.9
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.1e-145 520.4 364 70.9
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 9.4e-145 517.3 363 69.7
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 9.4e-145 517.3 362 70.4
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-144 516.9 363 70.2
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-144 516.9 363 70.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 2.1e-144 516.2 365 71.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 3.6e-144 515.4 363 70.0
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.7e-144 515.0 367 70.3
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 6.1e-144 514.6 365 70.1
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.0e-143 511.9 364 70.1
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 5.2e-143 511.5 364 69.8
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 8.8e-143 510.8 364 69.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.1e-142 510.4 363 70.5
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.5e-142 510.0 366 69.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.5e-142 510.0 362 70.7
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 3.3e-142 508.8 364 69.2
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.4e-142 508.4 364 69.8
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.3e-141 506.9 365 68.8
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.7e-141 506.5 364 69.8
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.4e-140 503.4 364 70.6
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 9.1e-140 500.7 362 67.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.6e-139 500.0 364 69.5
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-139 499.6 361 68.1
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.5e-139 498.4 366 67.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.3e-138 496.9 364 69.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.9e-138 495.7 363 67.5
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.5e-138 494.2 363 68.3
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.5e-137 492.7 337 71.5
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.6e-136 490.0 363 70.5
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.0e-135 485.3 307 75.6
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.0e-134 483.0 369 65.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 3.4e-134 482.3 355 68.5
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.2e-133 479.6 372 65.1
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.3e-133 478.0 391 62.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 5.0e-130 468.4 365 66.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 2.5e-129 466.1 361 64.5
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.2e-128 463.8 358 65.1
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.2e-128 463.8 361 64.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.7e-128 462.6 361 64.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 3.0e-127 459.1 362 64.6
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.8e-127 457.6 363 65.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.2e-126 457.2 361 63.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 3.4e-126 455.7 363 64.5
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.4e-126 455.7 362 63.8
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 7.5e-126 454.5 363 64.5
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 9.8e-126 454.1 364 65.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.3e-125 453.8 352 64.8
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.7e-125 453.4 369 64.2
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 2.2e-125 453.0 361 63.2
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.8e-124 449.9 363 63.4
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.4e-124 449.5 317 69.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 2.7e-123 446.0 388 60.3
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-122 443.0 365 61.6
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 8.6e-122 441.0 369 62.1
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 4.3e-121 438.7 377 61.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 3.6e-120 435.6 333 67.0
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.3e-114 417.2 302 68.2
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 8.6e-114 414.5 366 58.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.5e-113 412.9 363 61.4
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 9.5e-113 411.0 277 72.6
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.6e-112 409.1 361 58.7
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 8.0e-112 407.9 361 59.3
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.2e-110 404.1 340 61.5
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 5.8e-110 401.7 356 59.6
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.9e-109 399.4 361 58.2
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 9.5e-105 384.4 381 50.9
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.6e-104 383.6 377 56.8
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.5e-97 360.5 308 58.1
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.8e-96 356.3 243 72.0
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 6.2e-88 328.6 370 47.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.4e-84 317.4 385 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.4e-79 300.1 414 43.5
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-76 291.2 277 55.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.4e-76 290.8 215 67.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.0e-70 270.4 364 46.2
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 5.5e-68 262.3 196 65.3
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.7e-67 260.0 169 75.1
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 6.0e-67 258.8 305 48.2
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-65 254.6 169 72.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 8.1e-64 248.4 198 62.6
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 6.9e-63 245.4 212 59.9
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.1e-58 229.2 195 63.1
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.3e-53 214.5 160 66.2
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.5e-52 210.3 122 85.2
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.1e-51 205.7 122 83.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.2e-44 183.0 140 66.4
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 2.1e-43 180.6 199 49.7
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 7.9e-43 178.7 165 56.4
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 3.0e-42 176.8 253 42.3
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 6.7e-42 175.6 306 37.3
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.8e-40 170.2 122 73.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 2.0e-38 164.1 139 60.4
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 6.5e-37 159.1 141 61.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 7.4e-33 145.6 199 39.2
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-30 137.1 139 52.5
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.0e-26 125.2 114 55.3
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.0e-26 123.6 72 81.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.3e-25 120.2 84 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.2e-22 111.7 72 80.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 1.2e-19 101.7 390 22.6
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-18 98.2 77 59.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-15 85.5 133 34.6


User provided reference genes

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