Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010590.3 Solanum lycopersicum HOM05D004350 ORTHO05D005260 2.1e-88 328.9 158 100.0
CAN.G1344.6 Capsicum annuum HOM05D004350 ORTHO05D005260 1.1e-54 216.9 163 66.9
Sopen11g005390 Solanum pennellii HOM05D004350 ORTHO05D005260 4.2e-41 171.8 188 56.4
CAN.G525.29 Capsicum annuum HOM05D004350 ORTHO05D005260 6.6e-26 121.3 192 41.7
AUR62017968 Chenopodium quinoa HOM05D004350 ORTHO05D005260 3.3e-25 119.0 153 44.4
ClCG10G007720 Citrullus lanatus HOM05D004350 ORTHO05D005260 9.5e-25 117.5 179 44.1
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 9.5e-25 117.5 192 41.1
vmacro18559 Vaccinium macrocarpon HOM05D004350 ORTHO05D005260 2.1e-24 116.3 192 38.5
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 2.8e-24 115.9 192 40.1
PGSC0003DMG400023576 Solanum tuberosum HOM05D004350 ORTHO05D005260 6.2e-24 114.8 192 40.6
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 1.0e-23 114.0 192 38.0
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 1.4e-23 113.6 192 40.6
Ah.02g123600 Amaranthus hybridus HOM05D004350 ORTHO05D005260 1.8e-23 113.2 169 42.6
Lsat_1_v5_gn_2_70580 Lactuca sativa HOM05D004350 ORTHO05D005260 5.2e-23 111.7 192 41.1
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 8.9e-23 110.9 192 38.5
FAN19G0871 Fragaria x ananassa HOM05D004350 ORTHO05D005260 8.9e-23 110.9 173 42.2
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 1.2e-22 110.5 192 38.5
CSS0009628 Camellia sinensis var. sinensis HOM05D004350 ORTHO05D005260 1.5e-22 110.2 192 39.1
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 1.5e-22 110.2 192 39.1
FAN28G1749 Fragaria x ananassa HOM05D004350 ORTHO05D005260 2.0e-22 109.8 173 42.2
TWI53G1737 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 2.0e-22 109.8 192 37.5
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 2.6e-22 109.4 192 39.6
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 2.6e-22 109.4 192 38.0
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 2.6e-22 109.4 192 38.5
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 2.6e-22 109.4 192 38.0
FAN26G2403 Fragaria x ananassa HOM05D004350 ORTHO05D005260 3.4e-22 109.0 173 41.6
Actinidia28826 Actinidia chinensis HOM05D004350 ORTHO05D005260 5.8e-22 108.2 192 37.5
AUR62003659 Chenopodium quinoa HOM05D004350 ORTHO05D005260 5.8e-22 108.2 192 38.0
FAN23G0465 Fragaria x ananassa HOM05D004350 ORTHO05D005260 5.8e-22 108.2 173 41.0
Oeu003728.1 Olea europaea HOM05D004350 ORTHO05D005260 5.8e-22 108.2 192 38.5
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 7.5e-22 107.8 192 39.1
Phvul.003G289100 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 9.8e-22 107.5 193 37.8
Carub.0006s0896 Capsella rubella HOM05D004350 ORTHO05D005260 1.3e-21 107.1 195 39.5
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 1.3e-21 107.1 192 37.5
CiPaw.08G140000 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.7e-21 106.7 192 40.6
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 1.7e-21 106.7 193 38.3
Duzib264G0362 Durio zibethinus HOM05D004350 ORTHO05D005260 2.2e-21 106.3 195 36.4
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 2.9e-21 105.9 192 38.0
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 3.7e-21 105.5 192 36.5
Eucgr.K02898 Eucalyptus grandis HOM05D004350 ORTHO05D005260 4.9e-21 105.1 192 37.0
MD01G1038800 Malus domestica HOM05D004350 ORTHO05D005260 4.9e-21 105.1 191 36.6
Glyma.08G279700 Glycine max HOM05D004350 ORTHO05D005260 6.4e-21 104.8 192 37.5
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 6.4e-21 104.8 195 36.9
Nitab4.5_0009469g0010 Nicotiana tabacum HOM05D004350 ORTHO05D005260 6.4e-21 104.8 192 39.1
CARHR202810 Cardamine hirsuta HOM05D004350 ORTHO05D005260 8.3e-21 104.4 195 39.0
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 8.3e-21 104.4 195 37.9
Psat4g119600 Pisum sativum HOM05D004350 ORTHO05D005260 8.3e-21 104.4 191 37.7
THA.LOC104798725 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 8.3e-21 104.4 192 37.5
Lalb_Chr05g0216341 Lupinus albus HOM05D004350 ORTHO05D005260 1.1e-20 104.0 192 37.5
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 1.1e-20 104.0 192 37.0
THA.LOC104819292 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 1.1e-20 104.0 191 37.2
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 1.4e-20 103.6 193 36.3
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 1.4e-20 103.6 191 37.7
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 1.4e-20 103.6 192 39.1
Lj4g0019109 Lotus japonicus HOM05D004350 ORTHO05D005260 1.4e-20 103.6 192 38.0
Sp6g32950 Schrenkiella parvula HOM05D004350 ORTHO05D005260 1.4e-20 103.6 192 37.5
BcaB01g06282 Brassica carinata HOM05D004350 ORTHO05D005260 1.9e-20 103.2 192 38.0
Haze_03867 Corylus avellana HOM05D004350 ORTHO05D005260 1.9e-20 103.2 174 37.4
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 1.9e-20 103.2 192 37.5
Potri.007G010900 Populus trichocarpa HOM05D004350 ORTHO05D005260 1.9e-20 103.2 192 37.5
TWI74G1117 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 1.9e-20 103.2 189 36.0
VMungo0251G2520 Vigna mungo HOM05D004350 ORTHO05D005260 1.9e-20 103.2 192 36.5
BcaB08g37102 Brassica carinata HOM05D004350 ORTHO05D005260 2.4e-20 102.8 192 38.0
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 2.4e-20 102.8 191 36.1
EL10Ac6g15209 Beta vulgaris HOM05D004350 ORTHO05D005260 3.2e-20 102.4 192 35.4
FvH4_1g19690 Fragaria vesca HOM05D004350 ORTHO05D005260 3.2e-20 102.4 191 38.7
GSVIVG01005931001 Vitis vinifera HOM05D004350 ORTHO05D005260 3.2e-20 102.4 192 35.9
BraA03t09799Z Brassica rapa HOM05D004350 ORTHO05D005260 5.4e-20 101.7 200 36.5
Dinv13605 Davidia involucrata HOM05D004350 ORTHO05D005260 5.4e-20 101.7 203 35.5
Thhalv10014620m.g Eutrema salsugineum HOM05D004350 ORTHO05D005260 5.4e-20 101.7 192 37.0
PGR031G0248 Punica granatum HOM05D004350 ORTHO05D005260 5.4e-20 101.7 189 37.6
A03p04570 Brassica napus HOM05D004350 ORTHO05D005260 9.2e-20 100.9 192 37.5
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 9.2e-20 100.9 192 37.0
PSO017G6956 Papaver somniferum HOM05D004350 ORTHO05D005260 9.2e-20 100.9 192 35.9
PSO170G2632 Papaver somniferum HOM05D004350 ORTHO05D005260 9.2e-20 100.9 192 35.9
PSO170G6309 Papaver somniferum HOM05D004350 ORTHO05D005260 9.2e-20 100.9 192 35.9
Prupe.6G201300 Prunus persica HOM05D004350 ORTHO05D005260 9.2e-20 100.9 191 37.2
AL6G21000 Arabidopsis lyrata HOM05D004350 ORTHO05D005260 1.2e-19 100.5 195 37.4
CiPaw.07G047800 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.2e-19 100.5 192 34.4
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 1.2e-19 100.5 188 38.8
BcaB01g05531 Brassica carinata HOM05D004350 ORTHO05D005260 1.6e-19 100.1 192 37.0
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 1.6e-19 100.1 191 36.1
AT5G10480 Arabidopsis thaliana HOM05D004350 ORTHO05D005260 2.0e-19 99.8 195 37.4
Gohir.D11G216900 Gossypium hirsutum HOM05D004350 ORTHO05D005260 2.0e-19 99.8 195 36.4
Thecc.01G091200 Theobroma cacao HOM05D004350 ORTHO05D005260 2.0e-19 99.8 195 35.9
CANSAT01G3290 Cannabis sativa HOM05D004350 ORTHO05D005260 2.7e-19 99.4 192 36.5
Ca_22603_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 2.7e-19 99.4 193 36.8
CDE06G0701 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 3.5e-19 99.0 192 39.1
PSO170G6456 Papaver somniferum HOM05D004350 ORTHO05D005260 3.5e-19 99.0 203 35.5
CDE04G1055 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 6.0e-19 98.2 196 36.2
BolC3t13038H Brassica oleracea HOM05D004350 ORTHO05D005260 7.8e-19 97.8 200 35.5
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 7.8e-19 97.8 191 36.1
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 1.7e-18 96.7 189 37.0
COL.COLO4_27351 Corchorus olitorius HOM05D004350 ORTHO05D005260 2.3e-18 96.3 137 41.6
ECA246G1176 Erigeron canadensis HOM05D004350 ORTHO05D005260 3.9e-18 95.5 174 36.8
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 5.0e-18 95.1 192 34.9
C09p66790 Brassica napus HOM05D004350 ORTHO05D005260 6.6e-18 94.7 208 35.6
Nitab4.5_0001468g0120 Nicotiana tabacum HOM05D004350 ORTHO05D005260 8.6e-18 94.4 200 38.0
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 8.6e-18 94.4 191 35.1
SGA_v2.0_scaffold32G13177 Striga asiatica HOM05D004350 ORTHO05D005260 8.6e-18 94.4 191 34.6
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 8.6e-18 94.4 191 35.6
Nitab4.5_0000902g0360 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.1e-17 94.0 178 38.8
RcHm_v2.0_Chr2g0111251 Rosa chinensis HOM05D004350 ORTHO05D005260 1.1e-17 94.0 191 35.6
PSO541G1644 Papaver somniferum HOM05D004350 ORTHO05D005260 1.5e-17 93.6 192 34.4
PSO170G2166 Papaver somniferum HOM05D004350 ORTHO05D005260 3.3e-17 92.4 187 35.3
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 5.6e-17 91.7 192 33.9
TAR625G1314 Trochodendron aralioides HOM05D004350 ORTHO05D005260 7.3e-17 91.3 129 45.0
Zm00001eb124340 Zea mays HOM05D004350 ORTHO05D005260 1.6e-16 90.1 191 33.0
BolC9t59459H Brassica oleracea HOM05D004350 ORTHO05D005260 2.1e-16 89.7 224 34.4
Nitab4.5_0004153g0110 Nicotiana tabacum HOM05D004350 ORTHO05D005260 2.8e-16 89.4 159 39.6
BraA10t44761Z Brassica rapa HOM05D004350 ORTHO05D005260 4.7e-16 88.6 215 33.5
AUR62043746 Chenopodium quinoa HOM05D004350 ORTHO05D005260 4.0e-15 85.5 56 66.1
MD15G1313000 Malus domestica HOM05D004350 ORTHO05D005260 6.8e-15 84.7 80 55.0
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 8.9e-15 84.3 149 38.9
Lalb_Chr16g0381651 Lupinus albus HOM05D004350 ORTHO05D005260 2.6e-14 82.8 56 64.3
SEGI_08262 Sequoiadendron giganteum HOM05D004350 ORTHO05D005260 9.8e-14 80.9 56 62.5
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 1.3e-13 80.5 82 47.6
Migut.B00221 Erythranthe guttata HOM05D004350 ORTHO05D005260 1.7e-13 80.1 82 53.7
Lsat_1_v5_gn_3_62861 Lactuca sativa HOM05D004350 ORTHO05D005260 1.7e-13 80.1 52 67.3
Atru.chr3.1251 Acer truncatum HOM05D004350 ORTHO05D005260 2.2e-13 79.7 180 32.8
Peaxi162Scf00196g00225 Petunia axillaris HOM05D004350 ORTHO05D005260 2.2e-13 79.7 56 67.9
TAR381G0377 Trochodendron aralioides HOM05D004350 ORTHO05D005260 1.1e-12 77.4 171 36.8
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.9e-12 76.6 188 31.9
A10p27090 Brassica napus HOM05D004350 ORTHO05D005260 2.4e-12 76.3 172 34.9
Gorai.007G233000 Gossypium raimondii HOM05D004350 ORTHO05D005260 1.6e-11 73.6 173 32.4
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 2.7e-11 72.8 168 34.5
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 2.7e-11 72.8 168 34.5
Os01g0150500 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 3.5e-11 72.4 113 41.6
Aa31LG3G16680 Aethionema arabicum HOM05D004350 ORTHO05D005260 4.6e-11 72.0 169 32.5
QL06p035732 Quercus lobata HOM05D004350 ORTHO05D005260 6.0e-11 71.6 221 28.5
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 6.0e-11 71.6 170 33.5
Cfa006886 Carpinus fangiana HOM05D004350 ORTHO05D005260 7.8e-11 71.2 180 31.7
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 7.8e-11 71.2 67 52.2
Aa31LG5G22920 Aethionema arabicum HOM05D004350 ORTHO05D005260 1.7e-10 70.1 176 34.1
DCAR_014186 Daucus carota HOM05D004350 ORTHO05D005260 1.1e-09 67.4 149 33.6
PGSC0003DMG400016135 Solanum tuberosum HOM05D004350 ORTHO05D005260 2.5e-09 66.2 34 91.2
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 1.2e-08 63.9 80 42.5
PRCOL_00006117 Prasinoderma coloniale HOM05D004350 ORTHO05D005260 4.7e-08 62.0 84 41.7
SMO266G0038 Selaginella moellendorffii HOM05D004350 ORTHO05D005260 1.2e-06 57.4 165 27.9
Cpa.g.sc55.29 Carica papaya HOM05D004350 ORTHO05D005260 7.6e-06 54.7 34 73.5


User provided reference genes

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