Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 4.6e-172 607.8 311 100.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.4e-165 586.3 309 97.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 5.2e-160 567.8 309 94.5
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.1e-130 470.3 314 80.6
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 8.2e-121 437.6 310 76.1
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.4e-119 432.2 292 78.1
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.5e-77 293.9 321 56.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 4.2e-77 292.4 330 53.9
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 8.3e-73 278.1 324 51.9
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 6.6e-70 268.5 246 61.8
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 6.6e-70 268.5 299 55.5
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.2e-66 257.7 307 53.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.3e-65 254.2 321 50.5
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.4e-64 250.0 283 54.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 9.2e-64 248.1 298 53.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.6e-63 247.3 287 54.4
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.0e-63 246.9 308 51.6
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 4.6e-63 245.7 304 53.3
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.0e-62 244.6 302 51.7
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.3e-62 244.2 245 58.4
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.3e-62 244.2 319 52.7
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.9e-62 243.0 317 51.4
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.6e-62 241.5 279 52.0
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 8.6e-62 241.5 313 51.1
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.1e-61 241.1 313 51.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.1e-61 241.1 323 48.3
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.9e-61 240.4 307 53.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.6e-60 237.3 317 48.6
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 8.0e-60 235.0 309 48.9
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.0e-59 234.6 293 49.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.8e-59 233.8 388 44.1
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.1e-59 233.0 301 48.8
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.0e-59 232.6 294 51.4
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.2e-58 231.1 235 56.6
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 2.0e-58 230.3 230 55.7
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.0e-58 230.3 321 47.4
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 5.8e-58 228.8 247 57.9
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 7.5e-58 228.4 323 47.7
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 7.5e-58 228.4 304 47.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 9.8e-58 228.0 286 50.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 9.8e-58 228.0 298 48.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-57 227.6 276 52.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.7e-57 227.3 424 39.4
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.7e-57 227.3 309 48.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.7e-57 227.3 306 49.7
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.9e-57 226.5 313 48.9
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.9e-57 226.5 309 49.5
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 3.7e-57 226.1 318 49.7
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.4e-56 224.2 267 52.8
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.0e-56 221.9 308 49.7
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 7.0e-56 221.9 312 48.1
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 9.2e-56 221.5 300 49.7
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 3.5e-55 219.5 290 49.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.0e-55 218.8 273 50.2
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.0e-55 218.8 305 46.6
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 7.8e-55 218.4 273 50.2
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.0e-54 218.0 266 52.6
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.7e-54 217.2 312 47.8
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.0e-54 216.5 282 49.6
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.0e-54 215.7 213 59.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.9e-53 213.8 303 49.5
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.5e-53 213.4 264 53.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 3.3e-53 213.0 307 50.2
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 5.6e-53 212.2 240 50.8
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.2e-52 211.1 217 59.4
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.6e-52 210.7 196 61.2
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 2.1e-52 210.3 260 51.5
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.6e-52 209.5 256 48.8
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 4.7e-52 209.1 256 50.8
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 6.2e-52 208.8 229 52.8
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 8.1e-52 208.4 290 49.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.3e-51 206.8 212 59.4
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.1e-51 206.5 220 56.8
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.2e-51 205.7 214 58.4
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 6.8e-51 205.3 241 51.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 8.9e-51 204.9 290 49.0
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.2e-50 204.5 210 58.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.5e-50 204.1 214 57.9
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.5e-50 204.1 222 58.1
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 3.4e-50 203.0 209 55.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 3.4e-50 203.0 209 55.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 9.8e-50 201.4 221 51.6
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 9.8e-50 201.4 221 51.6
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.8e-50 201.4 289 45.0
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.3e-49 201.1 283 47.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.3e-49 201.1 213 54.5
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.7e-49 200.7 202 57.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 2.2e-49 200.3 284 45.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 2.9e-49 199.9 245 49.8
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.7e-49 199.5 249 50.6
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 4.9e-49 199.1 284 44.7
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.4e-49 198.7 224 52.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 8.3e-49 198.4 259 46.3
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 8.3e-49 198.4 157 68.2
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-48 197.6 223 55.6
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 4.1e-48 196.1 255 47.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 5.4e-48 195.7 234 53.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 2.7e-47 193.4 192 61.5
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 6.0e-47 192.2 202 56.4
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.7e-46 190.7 159 69.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.1e-45 188.0 174 64.9
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-45 188.0 268 47.0
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.9e-45 187.2 291 45.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.6e-45 185.7 254 50.0
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 8.1e-44 181.8 226 48.2
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.8e-43 180.6 311 42.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.8e-43 180.6 241 47.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 8.9e-43 178.3 159 63.5
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.2e-42 177.9 246 48.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.2e-42 177.9 238 47.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.7e-41 174.1 143 65.7
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 8.3e-41 171.8 154 65.6
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.1e-40 171.4 227 49.8
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.1e-40 171.4 175 60.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 7.1e-40 168.7 219 48.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.9e-38 162.9 294 38.8
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 5.1e-38 162.5 249 43.0
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 6.6e-38 162.2 154 58.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 3.3e-37 159.8 175 52.0
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 5.6e-37 159.1 266 38.3
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 9.6e-37 158.3 196 47.4
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.1e-36 157.1 139 65.5
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 3.6e-36 156.4 109 76.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 3.1e-35 153.3 138 63.0
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.2e-34 151.4 208 46.6
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.9e-30 136.3 144 54.9
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 2.5e-29 133.7 119 63.9
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.3e-29 132.1 259 40.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 7.3e-29 132.1 189 49.2
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-26 124.8 133 54.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.5e-26 124.4 152 55.3
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.4e-26 122.9 87 74.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.8e-26 122.5 111 60.4
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-22 111.3 107 62.6
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-19 101.7 103 53.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 7.6e-18 95.5 136 41.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.3e-17 94.7 145 43.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 8.4e-17 92.0 103 47.6
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.4e-16 91.3 92 58.7
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.4e-16 90.5 90 61.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-15 88.2 61 78.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 7.9e-15 85.5 119 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.6e-13 79.3 141 36.2
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-12 78.2 105 53.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 5.3e-11 72.8 46 84.8
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.9e-11 72.4 235 31.9
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.6e-10 68.9 49 77.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.9e-09 66.2 118 44.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.5e-07 60.1 176 24.4


User provided reference genes

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