Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.6e-172 608.6 303 100.0
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.8e-171 604.7 302 99.3
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 8.4e-163 577.0 302 94.7
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 8.2e-134 480.7 299 80.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.5e-124 449.9 261 85.4
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 5.2e-96 355.1 305 60.7
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.6e-95 352.8 211 82.5
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.1e-93 347.4 307 61.2
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.0e-87 326.6 304 56.6
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.3e-86 323.9 304 55.9
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.2e-86 323.2 319 54.9
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 4.9e-86 322.0 309 56.3
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.4e-85 319.7 307 56.4
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 4.1e-85 318.9 305 57.0
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 4.1e-85 318.9 305 55.7
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 3.0e-83 312.8 304 55.3
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 3.0e-83 312.8 305 54.8
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.1e-82 310.8 312 54.8
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.1e-82 310.8 303 53.5
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.9e-82 310.1 317 56.2
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 7.3e-82 308.1 315 52.7
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 9.5e-82 307.8 309 53.1
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.2e-81 307.4 303 56.1
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.2e-81 307.4 309 52.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.1e-81 306.6 309 53.4
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 6.2e-81 305.1 305 53.4
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.1e-80 304.3 297 54.5
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.4e-80 303.9 330 51.8
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.0e-80 302.4 189 80.4
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 4.0e-80 302.4 329 51.1
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 4.0e-80 302.4 306 53.6
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.2e-79 300.8 307 48.5
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.5e-79 300.4 351 48.4
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.7e-78 297.0 315 47.6
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.7e-78 297.0 312 49.4
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 2.9e-78 296.2 311 51.1
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 3.7e-78 295.8 307 52.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 4.9e-78 295.4 311 49.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 6.4e-78 295.0 311 52.7
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 6.4e-78 295.0 310 49.0
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.1e-77 294.3 314 52.2
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.1e-77 294.3 315 54.3
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.4e-77 293.9 312 49.4
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.9e-77 293.5 312 51.3
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.9e-77 293.5 310 49.0
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 5.4e-77 292.0 307 53.1
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 7.0e-77 291.6 310 52.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 9.2e-77 291.2 314 49.4
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 9.2e-77 291.2 303 53.8
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 9.2e-77 291.2 312 51.0
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.2e-76 290.8 306 51.6
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.2e-76 290.8 311 52.1
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.7e-76 289.7 304 53.6
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.7e-76 289.7 255 58.0
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 7.8e-76 288.1 315 51.4
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.3e-75 287.3 329 49.5
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-75 287.0 318 48.4
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.1e-74 284.3 314 51.0
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.5e-74 283.9 307 52.4
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.9e-74 283.5 313 52.4
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.9e-74 283.5 304 48.7
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 3.3e-74 282.7 310 52.6
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 3.3e-74 282.7 305 53.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 4.3e-74 282.3 318 50.0
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 5.6e-74 282.0 317 50.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.6e-73 280.4 309 50.2
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 3.6e-73 279.3 308 51.3
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 6.2e-73 278.5 283 53.4
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 8.1e-73 278.1 309 52.4
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 8.9e-72 274.6 313 51.8
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.1e-69 267.7 303 47.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.1e-66 257.7 294 47.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.5e-66 256.5 331 45.6
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.3e-66 255.8 321 46.7
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.0e-63 246.9 308 46.8
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.6e-63 246.5 387 41.6
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 5.8e-63 245.4 210 59.5
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 9.2e-61 238.0 294 49.0
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 1.6e-60 237.3 338 43.2
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.7e-60 236.5 305 44.3
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 7.8e-60 235.0 188 60.6
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.5e-58 230.7 303 46.2
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.9e-58 230.3 434 38.0
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.1e-57 226.9 334 42.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.1e-57 226.9 191 61.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.4e-56 224.2 193 56.5
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 5.2e-56 222.2 308 41.6
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.5e-55 220.7 205 54.1
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.4e-53 213.4 341 39.3
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 7.1e-53 211.8 330 42.4
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 3.5e-52 209.5 307 41.7
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.1e-50 204.5 307 42.0
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.9e-50 203.8 283 44.9
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 3.3e-50 203.0 316 41.5
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.3e-50 201.8 258 43.8
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.3e-49 201.1 367 35.7
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.4e-45 185.7 354 39.0
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 4.6e-44 182.6 202 53.0
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.9e-43 179.5 207 51.2
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 5.1e-43 179.1 283 38.9
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.9e-39 164.9 231 45.9
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.7e-36 156.8 151 55.6
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.3e-33 147.9 464 29.7
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 5.8e-31 139.0 334 35.0
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 8.4e-30 135.2 169 40.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.7e-27 125.6 83 77.1
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.3e-26 123.2 311 33.8
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.5e-23 114.4 93 62.4
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.6e-20 104.4 117 44.4
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.0e-19 101.7 85 60.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.4e-19 101.3 196 35.2
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.5e-18 97.1 59 78.0
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 4.3e-18 96.3 86 58.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.9e-14 83.6 153 35.9
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 2.5e-13 80.5 54 70.4
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-08 64.7 90 41.1
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.9e-07 59.3 88 43.2


User provided reference genes

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