Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 3.9e-232 807.7 407 100.0
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 1.8e-205 719.2 407 88.7
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.0e-200 701.8 391 90.0
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 4.1e-197 691.4 391 87.5
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 1.6e-193 679.5 391 87.7
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 4.0e-192 674.9 392 83.4
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 8.9e-192 673.7 392 84.2
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 2.6e-191 672.2 395 84.6
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 4.9e-190 667.9 392 83.2
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 4.1e-189 664.8 392 82.9
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.5e-188 661.4 394 83.8
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.5e-188 661.4 394 83.8
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 5.9e-188 661.0 395 82.5
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 7.8e-188 660.6 393 83.0
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.0e-187 660.2 393 82.2
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.7e-187 659.4 392 81.9
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 8.6e-187 657.1 393 83.5
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.9e-186 656.0 395 81.8
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.9e-186 656.0 395 81.0
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 3.3e-186 655.2 394 81.5
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 1.2e-185 653.3 391 82.4
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 1.2e-185 653.3 392 82.1
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.2e-185 653.3 392 82.1
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 2.8e-185 652.1 390 83.6
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 4.7e-185 651.4 397 81.1
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 1.4e-184 649.8 393 82.2
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 3.0e-184 648.7 382 83.5
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 4.0e-184 648.3 392 81.6
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 4.0e-184 648.3 394 81.7
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 8.9e-184 647.1 391 82.9
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 8.9e-184 647.1 394 81.7
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 8.9e-184 647.1 394 81.7
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 2.6e-183 645.6 394 82.2
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 4.4e-183 644.8 386 81.9
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.3e-182 643.3 394 81.0
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 1.7e-182 642.9 479 69.7
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 2.2e-182 642.5 394 82.2
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 2.2e-182 642.5 393 80.7
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.9e-182 642.1 394 80.5
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 6.4e-182 641.0 413 79.2
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.4e-181 639.8 392 80.9
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 1.4e-181 639.8 395 80.8
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 1.9e-181 639.4 392 81.4
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 4.1e-181 638.3 394 81.0
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 4.1e-181 638.3 391 80.3
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 5.4e-181 637.9 390 81.3
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.4e-181 637.9 394 80.5
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 7.0e-181 637.5 427 75.6
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.2e-180 636.7 393 80.2
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.6e-180 636.3 394 80.5
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.6e-180 636.3 394 80.5
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 2.0e-180 636.0 391 81.1
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 2.7e-180 635.6 389 80.5
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.7e-180 635.6 394 80.5
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 3.5e-180 635.2 394 78.9
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 3.5e-180 635.2 394 78.9
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 3.5e-180 635.2 394 78.9
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 4.6e-180 634.8 390 80.3
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 7.8e-180 634.0 393 79.6
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.0e-179 633.6 394 80.5
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.0e-179 633.6 391 81.1
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.3e-179 633.3 394 78.7
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 1.3e-179 633.3 390 80.5
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 1.3e-179 633.3 394 79.4
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.7e-179 632.9 394 78.7
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 1.7e-179 632.9 396 80.6
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.7e-179 632.9 392 80.1
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.7e-179 632.9 394 79.4
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 1.7e-179 632.9 395 79.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.3e-179 632.5 394 80.2
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.3e-179 632.5 395 81.5
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.0e-179 632.1 391 80.8
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 3.9e-179 631.7 394 80.2
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 3.9e-179 631.7 394 79.2
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 5.0e-179 631.3 391 79.5
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.1e-178 630.2 381 81.4
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 1.1e-178 630.2 395 79.2
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.5e-178 629.8 391 78.5
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 3.3e-178 628.6 389 79.7
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 7.3e-178 627.5 397 77.8
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.3e-178 627.5 392 79.3
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 9.5e-178 627.1 394 80.5
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 9.5e-178 627.1 393 78.4
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 6.2e-177 624.4 395 79.2
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.1e-176 623.6 390 77.7
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 1.1e-176 623.6 389 78.9
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-176 623.2 388 78.6
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 3.1e-176 622.1 392 79.6
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 3.1e-176 622.1 391 80.1
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 4.0e-176 621.7 395 79.0
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 6.8e-176 620.9 380 79.7
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 6.8e-176 620.9 389 78.7
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 8.9e-176 620.5 392 79.6
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 1.5e-175 619.8 380 79.5
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 2.6e-175 619.0 389 79.2
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.6e-175 619.0 377 81.4
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 3.4e-175 618.6 389 78.7
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 7.5e-175 617.5 393 78.4
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 4.9e-174 614.8 389 78.1
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 8.3e-174 614.0 394 76.6
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 4.1e-173 611.7 389 78.7
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 5.4e-173 611.3 394 77.9
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 7.0e-173 610.9 390 77.2
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 9.2e-173 610.5 367 81.2
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 4.6e-172 608.2 396 76.3
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 6.0e-172 607.8 390 76.4
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 1.0e-171 607.1 352 82.7
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.3e-171 606.7 393 75.3
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 3.9e-171 605.1 381 78.7
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 1.5e-170 603.2 389 76.6
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 2.5e-170 602.4 395 75.7
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 4.3e-170 601.7 392 76.0
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 5.6e-170 601.3 381 78.5
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 5.6e-170 601.3 386 76.7
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 2.8e-169 599.0 381 78.0
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 3.6e-169 598.6 391 75.2
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 4.7e-169 598.2 389 75.8
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 1.8e-168 596.3 381 77.7
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.8e-168 596.3 390 74.9
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 3.1e-168 595.5 390 74.9
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 1.5e-167 593.2 395 76.2
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.7e-166 589.7 444 68.5
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 1.7e-166 589.7 390 74.6
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.9e-166 589.0 391 74.7
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 2.9e-166 589.0 387 76.0
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 3.7e-166 588.6 390 74.6
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 8.3e-166 587.4 391 75.4
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 7.1e-165 584.3 391 73.4
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 7.1e-165 584.3 391 73.4
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 2.3e-163 579.3 329 84.2
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 3.2e-157 558.9 384 71.6
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.1e-154 550.4 512 57.8
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 9.6e-154 547.4 386 70.2
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 1.1e-152 543.9 389 72.2
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 5.8e-151 538.1 391 69.1
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 5.8e-151 538.1 337 77.7
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 1.1e-144 517.3 394 68.3
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 3.1e-144 515.8 393 67.7
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.2e-142 509.6 353 68.6
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.3e-139 500.4 353 68.0
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 2.3e-139 499.6 338 68.6
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 4.3e-138 495.4 352 67.6
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.8e-136 490.0 395 67.6
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 6.9e-136 488.0 389 65.8
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 3.8e-134 482.3 277 82.7
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 3.5e-132 475.7 270 82.6
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 1.8e-131 473.4 281 84.7
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.9e-130 469.9 335 67.8
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 4.5e-127 458.8 227 97.4
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 5.0e-118 428.7 278 78.4
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 2.4e-112 409.8 226 84.5
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 1.0e-107 394.4 227 82.4
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 5.0e-102 375.6 344 54.7
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 2.2e-94 350.1 305 60.7
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 3.2e-93 346.3 336 53.6
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 3.3e-90 336.3 343 52.5
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 3.7e-89 332.8 360 48.9
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 1.4e-75 287.7 158 86.1
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 2.2e-73 280.4 212 65.6
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.3e-70 271.2 172 75.0
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 6.6e-70 268.9 158 82.3
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.2e-67 259.2 145 86.2
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.1e-64 251.5 161 70.8
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 6.6e-62 242.3 159 74.2
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 1.5e-61 241.1 138 84.1
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 2.2e-57 227.3 466 34.3
SEGI_22983 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 1.2e-52 211.5 111 87.4
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.2e-51 206.1 159 66.7
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.4e-48 197.2 159 64.2
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 3.4e-42 176.8 328 33.8
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 2.5e-37 160.6 80 92.5
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 7.3e-37 159.1 80 91.2
arahy.Tifrunner.gnm1.ann1.2YR0GK Arachis hypogaea HOM05D003507 ORTHO05D021543 3.4e-34 150.2 155 57.4
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 7.6e-26 122.5 162 45.7
BcaC05g29473 Brassica carinata HOM05D003507 ORTHO05D021543 1.3e-25 121.7 116 58.6
Dinv22443 Davidia involucrata HOM05D003507 ORTHO05D182987 1.0e-22 112.1 134 52.2
Lalb_Chr01g0010251 Lupinus albus HOM05D003507 ORTHO05D021543 3.0e-22 110.5 75 72.0
Os04g0225001 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D021543 8.7e-22 109.0 64 85.9
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 3.3e-21 107.1 60 83.3
A06p14850 Brassica napus HOM05D003507 ORTHO05D021543 4.0e-19 100.1 61 80.3
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 1.3e-17 95.1 46 91.3
Lalb_Chr01g0010241 Lupinus albus HOM05D003507 ORTHO05D004324 5.0e-09 66.6 37 75.7
Nn6g35718 Nelumbo nucifera HOM05D003507 ORTHO05D021543 1.6e-07 61.6 46 65.2


User provided reference genes

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