Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 2167.1 1126 100.0
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 2064.7 1072 99.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1892.1 1144 87.3
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1850.9 1096 88.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1678.3 1077 81.0
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1676.8 1077 80.4
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1651.3 1088 78.8
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1632.8 1075 79.2
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1630.5 1080 77.8
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1618.2 1078 77.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1615.1 1079 77.4
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1614.7 1078 77.7
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1612.8 1072 77.9
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1612.4 1080 77.8
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1610.9 1077 77.8
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1609.0 1080 77.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1605.5 1080 77.5
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1600.5 1080 77.2
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1597.8 1077 76.7
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1595.5 1080 76.8
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1593.9 1080 76.4
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1590.1 1077 77.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1587.8 1077 75.6
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1575.5 1080 76.1
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1566.6 1080 75.6
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1564.3 1077 75.9
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1563.5 1080 75.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1560.8 1080 75.3
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1560.4 1077 75.4
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1559.7 1074 75.7
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1557.7 1074 75.7
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1556.2 1077 74.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1550.8 1075 75.9
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1550.4 1074 75.1
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1549.3 1086 74.9
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1548.5 1102 74.4
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1546.2 1034 77.6
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1545.0 1051 77.2
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1544.3 1077 74.9
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1543.9 1074 75.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1536.2 1083 74.3
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1536.2 1076 74.6
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1531.9 1074 75.0
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1527.3 1089 74.1
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1527.3 1074 74.9
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1525.0 1072 74.0
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1523.5 1076 73.0
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1517.3 1075 74.0
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1515.7 1072 74.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1514.6 1080 72.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1511.9 1076 73.9
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1511.5 1080 72.4
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1502.6 1084 73.7
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1501.9 1076 73.6
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1073 71.7
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1482.6 1073 71.5
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1474.1 1072 71.4
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1073 71.6
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1466.8 1073 70.7
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1456.0 1072 70.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1454.1 1088 69.9
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1453.7 1072 73.1
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1453.3 1088 69.9
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1451.4 1073 70.4
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1447.2 1084 69.7
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1442.9 1107 68.5
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1440.2 1073 70.5
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1092 69.0
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1076 69.4
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1436.8 1107 67.9
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1432.9 946 78.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1431.0 1073 70.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1430.6 1074 70.3
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1422.9 1060 69.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1420.2 1002 74.4
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1416.4 1092 68.2
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1414.8 1096 68.4
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1410.2 1061 69.7
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1408.3 1092 68.2
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1403.7 1076 69.0
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1393.6 993 73.2
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1389.8 1126 67.9
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1388.2 1092 67.7
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1385.9 1188 64.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1383.6 1074 67.9
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1376.3 1079 67.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1374.4 1077 68.9
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1372.8 1089 68.4
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1362.8 1116 66.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1360.9 1111 67.2
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1357.0 1154 66.1
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1347.8 1068 65.0
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1330.5 1076 66.9
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1323.5 1046 67.7
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1320.1 1068 64.4
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1317.8 1175 64.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1313.5 1074 64.6
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1099 63.3
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1296.6 1069 66.2
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1295.4 1022 66.5
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1282.3 1249 59.2
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1255.7 1064 64.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1223.0 882 73.1
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1219.1 1079 62.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1209.5 1063 63.0
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1171.8 905 67.2
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1171.4 744 81.6
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1098.6 915 65.6
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.1e-297 1026.9 978 59.9
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.9e-294 1014.6 1081 52.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.8e-293 1011.9 1095 51.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 7.2e-292 1007.7 726 73.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.6e-273 946.0 837 63.4
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-272 943.7 632 77.5
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 3.5e-270 935.6 558 87.6
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.7e-267 926.0 1094 49.1
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.1e-260 904.0 517 90.1
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 5.4e-255 885.2 1057 47.6
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.0e-250 869.4 1079 46.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.9e-237 825.9 776 61.3
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.2e-219 767.7 567 73.2
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 8.9e-218 761.5 563 70.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.2e-209 734.6 395 94.9
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 8.4e-208 728.4 706 58.4
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 7.1e-207 725.3 584 67.3
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.8e-194 684.1 842 50.5
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 4.5e-193 679.5 1227 37.6
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.2e-190 671.4 808 48.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.7e-184 651.0 536 66.0
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.1e-167 595.1 431 71.0
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.2e-148 531.9 373 75.3
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.8e-136 490.3 392 65.6
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.8e-134 484.2 356 73.0
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 4.9e-131 473.4 350 70.3
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-127 461.5 366 69.4
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 8.3e-115 419.5 351 66.1
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 3.2e-114 417.5 320 69.4
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 6.6e-104 383.3 283 70.0
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 2.1e-102 378.3 273 72.9
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.1e-95 355.9 365 54.5
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-92 345.5 228 77.2
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.1e-77 296.2 178 80.9
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.2e-67 261.9 194 73.7
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 5.0e-59 234.2 176 69.9
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 9.4e-58 229.9 143 77.6
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.8e-56 223.4 162 70.4
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.3e-54 219.5 130 81.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 7.7e-52 210.3 129 83.7
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.0e-48 199.9 137 70.1
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.3e-47 194.9 108 88.9
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 4.8e-38 164.5 131 65.6
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.0e-35 156.8 169 55.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.2e-35 155.6 96 79.2
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 5.5e-34 151.0 100 73.0
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 6.8e-32 144.1 85 78.8
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.0e-31 142.5 111 64.0
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.4e-31 141.4 111 68.5
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.8e-30 138.7 87 74.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 5.3e-29 134.4 86 70.9
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-27 129.8 92 73.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.7e-27 129.4 86 74.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.8e-27 128.3 200 34.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-25 122.9 79 70.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 6.1e-25 120.9 87 73.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.0e-25 120.6 81 66.7
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-23 116.3 81 69.1
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 5.5e-18 97.8 100 55.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 2.8e-17 95.5 83 62.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 2.8e-17 95.5 83 62.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 3.0e-16 92.0 62 75.8
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 3.0e-16 92.0 62 75.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.2e-15 90.1 71 64.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.4e-15 88.6 49 87.8
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.7e-12 79.0 58 69.0
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 8.6e-11 73.9 48 77.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 5.6e-10 71.2 53 67.9
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.8e-09 68.9 51 72.5
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.0e-07 62.8 52 55.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 8.3e-06 57.4 38 68.4


User provided reference genes

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