Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 0.0e+00 1076.2 730 100.0
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.9e-290 1002.3 730 95.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.5e-274 949.5 730 82.5
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.7e-177 627.1 686 58.7
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.5e-162 575.9 685 56.6
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 3.9e-121 439.9 600 51.3
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.4e-117 426.8 582 50.5
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.4e-117 426.4 582 50.5
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.8e-111 407.1 613 47.5
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 4.1e-107 393.3 614 46.9
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 8.9e-102 375.6 613 45.2
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.6e-98 364.8 565 48.0
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 2.6e-69 267.7 456 43.2
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.3e-68 265.4 464 42.2
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 4.5e-61 240.4 597 39.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.7e-60 238.4 801 31.8
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 2.9e-60 237.7 499 40.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 5.0e-60 236.9 504 39.9
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 7.2e-59 233.0 495 39.0
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.2e-58 232.3 504 39.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 3.3e-56 224.2 486 40.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 3.3e-56 224.2 497 39.8
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 9.7e-56 222.6 528 39.4
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.1e-54 219.2 430 41.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 4.5e-53 213.8 477 38.2
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 5.9e-53 213.4 482 38.8
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.0e-52 212.6 481 39.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.0e-52 210.3 489 39.3
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 6.5e-52 209.9 498 38.2
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.5e-52 209.5 501 38.1
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.4e-51 208.8 497 38.8
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.2e-51 207.2 611 33.9
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 4.2e-51 207.2 503 38.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 5.5e-51 206.8 497 38.6
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.1e-50 204.9 509 37.3
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 3.6e-50 204.1 504 36.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 4.7e-50 203.8 483 37.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 4.7e-50 203.8 580 35.3
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.7e-50 203.8 478 38.5
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.9e-50 203.0 360 43.6
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 7.9e-50 203.0 493 38.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.8e-49 201.8 540 37.0
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.5e-48 198.7 509 37.1
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.3e-48 197.6 528 36.4
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 5.7e-48 196.8 486 37.0
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 7.4e-48 196.4 504 37.1
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 7.4e-48 196.4 498 37.1
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 7.4e-48 196.4 497 38.2
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 6.3e-47 193.4 502 36.9
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 6.3e-47 193.4 523 35.2
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 8.2e-47 193.0 499 37.9
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.1e-46 192.6 549 35.9
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.4e-46 192.2 518 34.7
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.4e-46 192.2 528 35.0
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.4e-46 191.4 467 37.7
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.4e-46 191.4 492 36.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 2.4e-46 191.4 497 36.8
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.1e-46 190.7 529 35.2
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 5.3e-46 190.3 504 37.1
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 5.3e-46 190.3 482 37.1
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 7.0e-46 189.9 627 32.9
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-45 189.1 614 33.7
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.9e-44 184.5 549 37.0
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.1e-43 182.6 453 36.9
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 3.2e-43 181.0 507 37.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 5.5e-43 180.3 502 36.1
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.6e-42 177.6 420 38.1
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.0e-41 176.0 482 35.3
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.4e-41 175.6 566 33.2
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.7e-41 173.3 485 35.9
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 6.7e-41 173.3 482 35.7
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 8.8e-41 172.9 477 34.6
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.1e-40 172.6 483 35.0
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 3.1e-38 164.5 568 32.2
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 5.3e-38 163.7 499 33.9
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.6e-37 162.2 294 42.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.5e-37 160.6 572 32.2
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 7.7e-37 159.8 504 36.1
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.7e-36 158.7 475 33.9
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 8.5e-36 156.4 520 32.3
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 4.2e-35 154.1 475 34.3
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.2e-34 152.5 501 31.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.7e-34 150.6 656 29.1
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 4.7e-34 150.6 498 30.9
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 6.1e-34 150.2 362 39.2
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 4.0e-33 147.5 513 35.9
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 5.2e-33 147.1 510 31.4
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 6.8e-33 146.7 514 31.5
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-32 145.2 472 30.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.6e-32 144.8 483 32.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 5.7e-32 143.7 471 30.4
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 1.7e-31 142.1 524 30.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 8.3e-31 139.8 514 31.9
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.1e-30 139.4 531 29.6
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 5.3e-30 137.1 448 33.5
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 7.0e-30 136.7 481 34.1
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.2e-29 136.0 478 33.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.3e-28 132.5 473 30.0
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.3e-28 132.5 473 30.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 2.2e-28 131.7 587 29.0
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.9e-28 131.3 482 31.3
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 5.5e-27 127.1 481 30.6
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 2.1e-26 125.2 426 33.3
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.6e-26 124.4 484 32.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 8.0e-26 123.2 474 32.5
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 3.0e-25 121.3 252 38.1
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 4.0e-25 120.9 467 29.8
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 8.8e-25 119.8 458 29.5
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.4e-24 117.9 495 29.3
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 4.4e-24 117.5 501 29.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.7e-23 115.5 422 32.5
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.7e-23 115.5 496 29.4
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.2e-21 109.4 302 34.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.3e-20 105.9 464 30.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.6e-18 99.0 504 28.6
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.6e-18 97.8 530 27.4
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.4e-16 91.3 285 35.4
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 4.9e-15 87.4 193 40.4
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 3.2e-14 84.7 408 27.2
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 5.9e-13 80.5 372 30.1
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 8.6e-12 76.6 257 32.3
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 5.6e-11 73.9 257 31.9
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.6e-11 73.9 154 37.7
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 6.1e-10 70.5 365 27.9
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.2e-06 58.2 84 46.4


User provided reference genes

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