Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007240.1 Solanum lycopersicum HOM05D042599 ORTHO05D000412 1.3e-103 379.8 206 100.0
Peaxi162Scf00173g01210 Petunia axillaris HOM05D000581 ORTHO05D000412 2.3e-15 86.7 149 36.9
Lj2A30G108 Lonicera japonica HOM05D000581 ORTHO05D000412 3.1e-15 86.3 139 34.5
PGSC0003DMG400041941 Solanum tuberosum HOM05D042599 ORTHO05D000412 2.6e-14 83.2 57 66.7
Oeu061788.1 Olea europaea HOM05D000581 ORTHO05D000412 7.5e-14 81.6 151 29.8
Nitab4.5_0000962g0120 Nicotiana tabacum HOM05D057732 ORTHO05D000412 2.2e-13 80.1 145 35.9
Migut.F00899 Erythranthe guttata HOM05D000581 ORTHO05D000412 3.2e-12 76.3 128 34.4
Dinv06783 Davidia involucrata HOM05D000581 ORTHO05D000412 1.6e-11 73.9 119 34.5
Manes.07G089000 Manihot esculenta HOM05D000581 ORTHO05D000412 3.0e-10 69.7 126 32.5
Ciclev10033008m.g Citrus clementina HOM05D000581 ORTHO05D000412 3.9e-10 69.3 132 34.1
Potri.010G236300 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.5e-09 66.6 146 27.4
Lj4g0022090 Lotus japonicus HOM05D028119 ORTHO05D000412 1.2e-08 64.3 146 30.8
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 1.2e-08 64.3 146 30.8
Sabra16G0108900 Salix brachista HOM05D000581 ORTHO05D000412 2.1e-08 63.5 144 29.2
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 2.8e-08 63.2 145 32.4
Atru.chr12.987 Acer truncatum HOM05D000581 ORTHO05D000412 3.6e-08 62.8 139 25.9
VMungo0251G1142 Vigna mungo HOM05D028119 ORTHO05D000412 3.6e-08 62.8 148 29.1
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 4.7e-08 62.4 146 30.1
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 4.7e-08 62.4 146 30.8
Nitab4.5_0002093g0110 Nicotiana tabacum HOM05D000581 ORTHO05D000412 4.7e-08 62.4 148 29.1
Pp3c17_11700 Physcomitrium patens HOM05D000581 ORTHO05D000412 4.7e-08 62.4 136 28.7
Rhsim01G0278500 Rhododendron simsii HOM05D000581 ORTHO05D000412 4.7e-08 62.4 126 30.2
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 6.2e-08 62.0 144 29.9
unitig_748.g8568 Utricularia gibba HOM05D000581 ORTHO05D000412 6.2e-08 62.0 138 30.4
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 8.1e-08 61.6 144 29.2
Lj5g0007928 Lotus japonicus HOM05D000581 ORTHO05D000412 8.1e-08 61.6 140 29.3
Potri.016G113500 Populus trichocarpa HOM05D000581 ORTHO05D000412 8.1e-08 61.6 138 29.0
CARHR002780 Cardamine hirsuta HOM05D000581 ORTHO05D000412 1.1e-07 61.2 149 28.9
Sabra10G0183400 Salix brachista HOM05D000581 ORTHO05D000412 1.1e-07 61.2 146 27.4
COL.COLO4_04303 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.4e-07 60.8 146 25.3
COL.COLO4_27209 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.4e-07 60.8 146 25.3
Os09g0567400 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 1.8e-07 60.5 139 26.6
MSTRG.12581 Avicennia marina HOM05D000581 ORTHO05D000412 2.3e-07 60.1 148 27.7
Hund20619 Selenicereus undatus HOM05D000581 ORTHO05D000412 2.3e-07 60.1 121 32.2
EL10Ac4g09288 Beta vulgaris HOM05D000581 ORTHO05D000412 3.1e-07 59.7 133 30.8
Sc16g0008270 Simmondsia chinensis HOM05D000581 ORTHO05D000412 3.1e-07 59.7 148 29.7
TWI14G0158 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 3.1e-07 59.7 133 29.3
Zm00001eb176120 Zea mays HOM05D000581 ORTHO05D000412 3.1e-07 59.7 139 27.3
Migut.N02131 Erythranthe guttata HOM05D000581 ORTHO05D000412 4.0e-07 59.3 120 32.5
Manes.05G071000 Manihot esculenta HOM05D000581 ORTHO05D000412 4.0e-07 59.3 148 27.0
Sabra14G0102700 Salix brachista HOM05D000581 ORTHO05D000412 4.0e-07 59.3 149 27.5
Zm00001eb039590 Zea mays HOM05D000581 ORTHO05D000412 4.0e-07 59.3 139 28.1
ATR0705G125 Amborella trichopoda HOM05D000581 ORTHO05D000412 5.2e-07 58.9 132 29.5
MSTRG.17429 Avicennia marina HOM05D000581 ORTHO05D000412 5.2e-07 58.9 135 30.4
Zm00001eb096040 Zea mays HOM05D000581 ORTHO05D000412 5.2e-07 58.9 136 26.5
Atru.chr12.1026 Acer truncatum HOM05D000581 ORTHO05D000412 6.8e-07 58.5 151 25.2
Carub.0003s2155 Capsella rubella HOM05D000581 ORTHO05D000412 6.8e-07 58.5 132 34.1
CARHR097440 Cardamine hirsuta HOM05D000581 ORTHO05D000412 6.8e-07 58.5 132 34.1
Cpa.g.sc728.2 Carica papaya HOM05D000581 ORTHO05D000412 6.8e-07 58.5 148 25.7
Gohir.A06G091600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 6.8e-07 58.5 149 26.2
TAR383G0489 Trochodendron aralioides HOM05D000581 ORTHO05D000412 6.8e-07 58.5 134 27.6
Lj3g0013246 Lotus japonicus HOM05D000581 ORTHO05D000412 8.9e-07 58.2 139 28.8
Potri.006G098200 Populus trichocarpa HOM05D000581 ORTHO05D000412 8.9e-07 58.2 128 30.5
Atru.chr5.1313 Acer truncatum HOM05D000581 ORTHO05D000412 1.2e-06 57.8 133 29.3
EL10Ac5g11060 Beta vulgaris HOM05D000581 ORTHO05D000412 1.2e-06 57.8 142 28.9
Nitab4.5_0003058g0010 Nicotiana tabacum HOM05D000581 ORTHO05D000412 1.2e-06 57.8 153 28.8
TAR626G1761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.2e-06 57.8 134 27.6
A01p33390 Brassica napus HOM05D000581 ORTHO05D000412 1.5e-06 57.4 132 33.3
BraA01t03461Z Brassica rapa HOM05D000581 ORTHO05D000412 1.5e-06 57.4 132 33.3
CiPaw.01G231600 Carya illinoinensis HOM05D000581 ORTHO05D000412 1.5e-06 57.4 147 27.9
Gohir.D12G006700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-06 57.4 133 30.1
Gorai.008G006900 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.5e-06 57.4 133 30.1
HanXRQChr04g0112931 Helianthus annuus HOM05D000581 ORTHO05D000412 1.5e-06 57.4 133 27.8
MBI01_g10134_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 1.5e-06 57.4 133 28.6
QL12p023127 Quercus lobata HOM05D000581 ORTHO05D000412 1.5e-06 57.4 122 31.1
Rhsim07G0178400 Rhododendron simsii HOM05D000581 ORTHO05D000412 1.5e-06 57.4 134 29.1
PGSC0003DMG401020117 Solanum tuberosum HOM05D000581 ORTHO05D000412 1.5e-06 57.4 148 28.4
CiPaw.01G155900 Carya illinoinensis HOM05D000581 ORTHO05D000412 2.0e-06 57.0 134 28.4
Gohir.A12G007300 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.0e-06 57.0 129 31.0
Lalb_Chr06g0167851 Lupinus albus HOM05D000581 ORTHO05D000412 2.0e-06 57.0 133 29.3
Nitab4.5_0000059g0300 Nicotiana tabacum HOM05D000581 ORTHO05D000412 2.0e-06 57.0 133 28.6
Potri.008G197600 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.0e-06 57.0 134 27.6
Actinidia00719 Actinidia chinensis HOM05D000581 ORTHO05D000412 2.6e-06 56.6 148 25.0
AL3G35620 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 2.6e-06 56.6 132 33.3
AT1G03430 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 2.6e-06 56.6 135 28.1
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 2.6e-06 56.6 141 30.5
Thhalv10021689m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 2.6e-06 56.6 132 33.3
Gohir.D06G090900 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.6e-06 56.6 149 25.5
Manes.03G189000 Manihot esculenta HOM05D000581 ORTHO05D000412 2.6e-06 56.6 134 28.4
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 2.6e-06 56.6 133 28.6
Sed0015069 Sechium edule HOM05D000581 ORTHO05D000412 2.6e-06 56.6 139 28.8
Sc12g0009760 Simmondsia chinensis HOM05D000581 ORTHO05D000412 2.6e-06 56.6 134 28.4
Sc15g0001900 Simmondsia chinensis HOM05D000581 ORTHO05D000412 2.6e-06 56.6 145 26.2
Sopen06g035800 Solanum pennellii HOM05D000581 ORTHO05D000412 2.6e-06 56.6 146 28.8
SGA_v2.0_scaffold172G39043 Striga asiatica HOM05D000581 ORTHO05D000412 2.6e-06 56.6 148 26.4
Aa31LG8G3500 Aethionema arabicum HOM05D000581 ORTHO05D000412 3.4e-06 56.2 140 27.1
Aqoxy5G00588 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 3.4e-06 56.2 122 27.9
AT3G21510 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 3.4e-06 56.2 118 35.6
EL10Ac7g17176 Beta vulgaris HOM05D000581 ORTHO05D000412 3.4e-06 56.2 142 28.2
BcaB04g20584 Brassica carinata HOM05D000581 ORTHO05D000412 3.4e-06 56.2 132 33.3
CANSAT56G1346 Cannabis sativa HOM05D000581 ORTHO05D000412 3.4e-06 56.2 142 28.2
CsaV3_3G023600 Cucumis sativus L. HOM05D000581 ORTHO05D000412 3.4e-06 56.2 134 30.6
Migut.I00899 Erythranthe guttata HOM05D000581 ORTHO05D000412 3.4e-06 56.2 138 29.0
Lj6g0021208 Lotus japonicus HOM05D000373 ORTHO05D001146 3.4e-06 56.2 135 28.9
Lalb_Chr24g0396161 Lupinus albus HOM05D000581 ORTHO05D000412 3.4e-06 56.2 148 28.4
Lalb_Chr25g0280161 Lupinus albus HOM05D000581 ORTHO05D000412 3.4e-06 56.2 148 27.7
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 3.4e-06 56.2 135 27.4
Oeu044805.1 Olea europaea HOM05D000581 ORTHO05D000412 3.4e-06 56.2 135 30.4
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 3.4e-06 56.2 142 26.8
Aa31LG8G8190 Aethionema arabicum HOM05D000581 ORTHO05D000412 4.4e-06 55.8 134 28.4
Aqoxy2G01327 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 4.4e-06 55.8 138 29.0
C04p45680 Brassica napus HOM05D000581 ORTHO05D000412 4.4e-06 55.8 154 26.0
Cfa006061 Carpinus fangiana HOM05D000581 ORTHO05D000412 4.4e-06 55.8 148 25.7
Cc02_g32420 Coffea canephora HOM05D000581 ORTHO05D000412 4.4e-06 55.8 133 28.6
Nitab4.5_0006816g0020 Nicotiana tabacum HOM05D000581 ORTHO05D000412 4.4e-06 55.8 135 28.1
Sabra08G0162700 Salix brachista HOM05D000581 ORTHO05D000412 4.4e-06 55.8 134 26.9
Sp3g19550 Schrenkiella parvula HOM05D000581 ORTHO05D000412 4.4e-06 55.8 118 35.6
Sed0002879 Sechium edule HOM05D000581 ORTHO05D000412 4.4e-06 55.8 142 28.9
ATR0012G044 Amborella trichopoda HOM05D000581 ORTHO05D000412 5.8e-06 55.5 148 28.4
BcaC09g49088 Brassica carinata HOM05D000581 ORTHO05D000412 5.8e-06 55.5 132 32.6
CSS0005690 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 5.8e-06 55.5 129 27.1
Carub.0001s0256 Capsella rubella HOM05D000581 ORTHO05D000412 5.8e-06 55.5 149 28.2
CiPaw.07G097700 Carya illinoinensis HOM05D000581 ORTHO05D000412 5.8e-06 55.5 122 31.1
Haze_04790 Corylus avellana HOM05D000581 ORTHO05D000412 5.8e-06 55.5 135 26.7
ECA247G2450 Erigeron canadensis HOM05D000581 ORTHO05D000412 5.8e-06 55.5 120 29.2
Gohir.A05G286750 Gossypium hirsutum HOM05D018033 ORTHO05D022230 5.8e-06 55.5 137 25.5
Gohir.D05G287700 Gossypium hirsutum HOM05D018033 ORTHO05D000412 5.8e-06 55.5 137 25.5
Gorai.009G302700 Gossypium raimondii HOM05D018033 ORTHO05D022230 5.8e-06 55.5 137 25.5
Potri.010G027100 Populus trichocarpa HOM05D000581 ORTHO05D000412 5.8e-06 55.5 134 27.6
Sp1g02400 Schrenkiella parvula HOM05D000581 ORTHO05D000412 5.8e-06 55.5 148 25.0
THA.LOC104817959 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 5.8e-06 55.5 134 27.6
MSTRG.11029 Avicennia marina HOM05D000581 ORTHO05D000412 7.5e-06 55.1 151 26.5
Duzib187G0513 Durio zibethinus HOM05D000581 ORTHO05D000412 7.5e-06 55.1 149 26.2
Thhalv10009010m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 7.5e-06 55.1 129 27.9
Lsat_1_v5_gn_4_97481 Lactuca sativa HOM05D000581 ORTHO05D000412 7.5e-06 55.1 147 27.2
Os01g0743800 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 7.5e-06 55.1 135 27.4
Phvul.006G159300 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 7.5e-06 55.1 129 27.9
PGR142G4359 Punica granatum HOM05D000581 ORTHO05D000412 7.5e-06 55.1 136 27.9
SMO351G0336 Selaginella moellendorffii HOM05D000581 ORTHO05D000412 7.5e-06 55.1 129 25.6
Ah.01g005810 Amaranthus hybridus HOM05D000581 ORTHO05D000412 9.9e-06 54.7 149 27.5
arahy.Tifrunner.gnm1.ann1.5X1YG2 Arachis hypogaea HOM05D000581 ORTHO05D000412 9.9e-06 54.7 142 26.8
arahy.Tifrunner.gnm1.ann1.JWG320 Arachis hypogaea HOM05D000581 ORTHO05D000412 9.9e-06 54.7 148 25.7
arahy.Tifrunner.gnm1.ann1.R40G9H Arachis hypogaea HOM05D000581 ORTHO05D000412 9.9e-06 54.7 142 26.8
C01p42660 Brassica napus HOM05D000581 ORTHO05D000412 9.9e-06 54.7 118 34.7
BolC1t04222H Brassica oleracea HOM05D000581 ORTHO05D000412 9.9e-06 54.7 118 34.7
CSS0043734 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 9.9e-06 54.7 148 27.7
CAN.G1682.6 Capsicum annuum HOM05D000581 ORTHO05D000412 9.9e-06 54.7 129 27.9
CiPaw.13G139200 Carya illinoinensis HOM05D000581 ORTHO05D000412 9.9e-06 54.7 129 27.1
Lj3A807T52 Lonicera japonica HOM05D000581 ORTHO05D000412 9.9e-06 54.7 133 28.6
Peaxi162Scf00095g00213 Petunia axillaris HOM05D000581 ORTHO05D000412 9.9e-06 54.7 133 27.8
GSVIVG01022018001 Vitis vinifera HOM05D000581 ORTHO05D000412 9.9e-06 54.7 124 33.9


User provided reference genes

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