Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 5.5e-212 740.7 379 100.0
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 8.8e-210 733.4 379 98.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.0e-194 683.3 379 91.0
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.7e-192 676.0 379 89.7
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 4.8e-192 674.5 379 89.2
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.6e-163 579.7 379 74.4
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 3.1e-162 575.5 379 73.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 4.9e-160 568.2 379 76.8
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.3e-157 559.3 376 71.8
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 4.7e-155 551.6 375 70.1
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 4.0e-154 548.5 375 70.7
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 6.8e-154 547.7 376 70.7
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 8.9e-154 547.4 379 70.2
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.2e-153 547.0 376 69.9
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.5e-153 546.6 361 72.3
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.6e-153 545.8 376 70.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.7e-152 543.1 376 70.2
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.1e-151 540.4 376 69.1
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.1e-151 540.4 376 71.3
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.4e-151 540.0 376 70.2
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.6e-150 536.6 376 67.8
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.6e-150 536.6 375 68.0
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.6e-150 536.6 376 68.4
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.6e-150 536.6 379 69.7
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 3.5e-150 535.4 375 69.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 3.5e-150 535.4 375 68.8
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.0e-150 534.6 376 68.4
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.8e-150 534.3 378 66.9
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 7.8e-150 534.3 375 67.7
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.0e-149 532.3 377 67.9
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.0e-149 532.3 379 68.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.5e-148 530.0 375 66.9
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.5e-148 530.0 375 67.2
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.2e-147 526.9 376 67.8
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 4.7e-147 525.0 379 66.8
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.4e-146 523.5 375 67.2
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 5.2e-146 521.5 429 62.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.9e-146 520.8 376 68.1
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.4e-145 518.8 376 68.9
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.8e-144 515.4 379 63.6
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.2e-143 512.3 375 65.6
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.2e-143 512.3 385 64.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 4.1e-143 511.9 380 64.7
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 4.1e-143 511.9 380 66.3
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 5.4e-143 511.5 379 67.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 3.5e-142 508.8 380 65.5
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.6e-142 508.4 376 64.9
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.0e-141 507.3 375 66.7
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 5.1e-141 505.0 375 64.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 8.6e-141 504.2 375 66.7
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.3e-140 501.9 375 66.4
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.6e-139 500.0 380 64.5
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 2.1e-139 499.6 380 61.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 6.2e-139 498.0 375 65.3
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.4e-138 496.9 373 64.9
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.4e-138 496.1 375 62.9
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 4.0e-138 495.4 380 61.8
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 5.2e-138 495.0 379 61.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 5.2e-138 495.0 376 65.2
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.2e-137 493.8 379 62.0
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.5e-137 493.4 380 61.6
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.0e-137 493.0 379 60.9
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.0e-137 493.0 380 61.3
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 2.6e-137 492.7 379 61.7
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 4.4e-137 491.9 380 61.3
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 4.4e-137 491.9 380 61.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 7.6e-137 491.1 379 60.7
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 7.6e-137 491.1 373 64.9
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 7.6e-137 491.1 379 62.0
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 9.9e-137 490.7 378 63.8
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.2e-136 489.6 375 63.5
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.2e-136 489.6 375 63.7
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 8.4e-136 487.6 379 61.7
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 8.4e-136 487.6 379 60.9
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.4e-135 486.9 381 61.7
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.7e-133 479.9 406 59.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.3e-133 479.6 379 61.7
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.9e-132 476.5 380 60.8
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.6e-131 473.4 378 60.3
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 8.1e-131 471.1 376 60.6
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.0e-130 468.8 427 56.0
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 6.9e-130 468.0 365 63.8
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 2.0e-129 466.5 377 61.5
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 5.8e-129 464.9 398 59.3
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 1.6e-126 456.8 375 61.3
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.1e-126 456.4 376 58.2
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 8.1e-123 444.5 316 66.8
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 7.6e-121 438.0 379 58.3
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 9.9e-121 437.6 375 58.4
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 9.3e-119 431.0 375 57.6
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.3e-117 426.4 368 55.7
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 5.8e-113 411.8 385 56.1
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 2.2e-104 383.3 266 67.7
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 6.7e-101 371.7 376 48.7
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 7.4e-100 368.2 372 50.8
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 9.7e-100 367.9 272 65.4
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 3.4e-89 332.8 406 47.0
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.0e-88 331.3 276 60.9
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.6e-81 306.6 191 75.4
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.3e-80 304.3 371 43.4
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.3e-75 285.4 263 57.0
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.8e-66 257.3 368 38.6
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 5.4e-50 202.6 222 48.6
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 5.4e-50 202.6 222 48.6
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 7.0e-50 202.2 166 62.0
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.9e-48 196.4 169 53.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.3e-47 193.0 379 40.1
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.3e-45 187.2 124 66.9
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 6.8e-45 185.7 138 62.3
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.4e-42 177.9 135 66.7
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 7.0e-42 175.6 112 68.8
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 6.6e-40 169.1 124 65.3
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.3e-32 144.1 109 71.6
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 8.6e-32 142.1 371 29.9
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 2.8e-30 137.1 119 55.5
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.2e-20 105.1 82 68.3
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 2.0e-20 104.4 355 26.5
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.3e-16 91.7 51 82.4
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.3e-15 86.7 74 62.2
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.3e-14 85.1 50 86.0
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.6e-14 83.6 73 64.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.4e-13 81.6 52 80.8
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 9.9e-12 75.5 115 44.3
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-11 75.1 54 66.7
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 7.1e-10 69.3 36 91.7
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.6e-09 68.2 50 72.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 4.6e-09 66.6 44 75.0
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.0e-08 63.9 48 66.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 5.1e-08 63.2 62 56.5
Gohir.D12G253500 Gossypium hirsutum HOM05D002314 ORTHO05D002538 1.1e-07 62.0 161 34.8
Gorai.008G271000 Gossypium raimondii HOM05D002314 ORTHO05D002538 1.1e-07 62.0 161 34.8
Gohir.A12G252000 Gossypium hirsutum HOM05D002314 ORTHO05D002538 1.5e-07 61.6 161 34.8
MCO11G815 Micromonas commoda HOM05D000406 ORTHO05D002714 2.5e-07 60.8 282 27.0
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 4.3e-07 60.1 278 26.6
C06p54340 Brassica napus HOM05D001142 ORTHO05D004628 4.3e-07 60.1 278 26.3
BolC6t40445H Brassica oleracea HOM05D001142 ORTHO05D004628 4.3e-07 60.1 278 26.3
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 4.3e-07 60.1 278 26.6
COL.COLO4_35660 Corchorus olitorius HOM05D002314 ORTHO05D002538 4.3e-07 60.1 220 28.6
MD07G1284500 Malus domestica HOM05D002314 ORTHO05D002538 5.6e-07 59.7 378 26.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 7.4e-07 59.3 39 74.4
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.4e-07 59.3 53 54.7
Thecc.03G192300 Theobroma cacao HOM05D002314 ORTHO05D002538 7.4e-07 59.3 161 33.5
MD01G1214800 Malus domestica HOM05D002314 ORTHO05D002538 1.3e-06 58.5 378 25.9
BcaC08g47559 Brassica carinata HOM05D001142 ORTHO05D004628 1.6e-06 58.2 269 25.7
DCAR_020299 Daucus carota HOM05D002314 ORTHO05D002538 1.6e-06 58.2 175 30.3
Thhalv10018951m.g Eutrema salsugineum HOM05D001142 ORTHO05D004628 1.6e-06 58.2 272 26.8
Prupe.2G306700 Prunus persica HOM05D002314 ORTHO05D002538 1.6e-06 58.2 378 25.9
Duzib205G0270 Durio zibethinus HOM05D002314 ORTHO05D002538 2.1e-06 57.8 160 30.0
Gorai.006G098000 Gossypium raimondii HOM05D001142 ORTHO05D004628 2.8e-06 57.4 285 22.5
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 3.7e-06 57.0 39 69.2
Cpa.g.c40727 Carica papaya HOM05D005972 ORTHO05D007548 6.2e-06 56.2 46 56.5
Gohir.D09G082200 Gossypium hirsutum HOM05D001142 ORTHO05D004628 6.2e-06 56.2 278 23.0
Glyma.05G157800 Glycine max HOM05D000406 ORTHO05D003425 8.1e-06 55.8 121 30.6
Gohir.A09G082400 Gossypium hirsutum HOM05D001142 ORTHO05D004628 8.1e-06 55.8 285 22.5


User provided reference genes

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