Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 0.0e+00 1661.4 853 100.0
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 0.0e+00 1651.0 853 99.2
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 0.0e+00 1547.3 883 91.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 0.0e+00 1320.4 894 77.7
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 0.0e+00 1318.5 889 78.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 0.0e+00 1283.5 896 75.4
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 0.0e+00 1170.6 768 80.7
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 5.7e-249 864.8 876 54.5
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.2e-244 847.8 865 53.3
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.0e-242 842.4 862 53.1
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-235 818.9 880 51.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.8e-224 782.7 870 49.5
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.0e-222 776.5 890 49.8
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.4e-217 759.2 893 49.3
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.1e-212 744.2 889 47.6
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.9e-212 743.4 944 47.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 9.5e-212 741.1 906 49.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 3.6e-211 739.2 854 49.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.7e-209 731.9 902 46.7
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.8e-208 729.6 876 48.2
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.9e-205 719.5 880 46.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 6.6e-205 718.4 827 49.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.4e-202 710.7 891 47.0
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.8e-201 704.5 710 53.2
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.1e-199 701.0 864 47.6
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-199 701.0 914 45.8
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.6e-198 697.2 882 46.6
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.9e-197 692.6 879 46.2
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 8.6e-197 691.4 866 46.8
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 4.3e-196 689.1 863 46.3
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 5.6e-196 688.7 890 45.5
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 7.3e-196 688.3 886 45.7
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.2e-195 687.6 887 45.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 6.8e-194 681.8 880 46.7
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.9e-192 675.6 859 45.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-191 674.1 859 45.4
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.4e-191 673.3 822 47.2
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.6e-190 669.1 896 45.4
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 6.0e-190 668.7 861 44.7
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.1e-189 665.6 886 45.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.6e-189 664.8 865 45.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.5e-188 664.1 855 46.1
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 4.3e-188 662.5 891 45.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.3e-188 662.5 874 44.9
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.6e-187 660.6 882 44.2
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.1e-186 656.4 884 45.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.6e-185 653.3 869 44.8
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.7e-184 650.6 862 44.8
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.9e-184 649.0 871 44.1
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 5.4e-183 645.6 925 43.9
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.1e-182 643.7 898 43.2
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 8.6e-181 638.3 902 43.2
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.6e-179 634.0 884 44.0
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.1e-179 633.6 894 43.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-179 633.3 887 44.1
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.8e-178 630.6 877 43.9
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.9e-178 628.2 760 47.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 5.8e-177 625.5 888 42.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-175 620.9 886 43.1
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.9e-175 620.5 897 44.3
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 9.3e-175 618.2 789 44.9
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.3e-173 614.4 744 47.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.3e-172 608.6 732 46.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 9.6e-172 608.2 882 42.4
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.6e-171 607.4 884 42.3
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 3.6e-171 606.3 871 41.6
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.4e-170 603.6 877 42.3
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.0e-169 600.5 874 42.7
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.0e-169 600.5 899 42.0
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 3.2e-167 593.2 862 42.5
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 7.1e-167 592.0 768 46.7
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.7e-166 590.1 893 41.8
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.3e-165 587.8 804 44.8
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.1e-164 584.7 870 42.3
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.4e-162 577.0 621 50.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.4e-159 567.0 923 39.9
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 5.4e-159 565.8 811 42.8
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.5e-158 563.1 673 46.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.0e-157 561.6 856 40.7
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.8e-157 560.8 876 41.0
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.5e-156 557.8 728 44.0
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.3e-156 556.6 675 45.3
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 4.3e-156 556.2 884 39.5
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 8.1e-155 552.0 871 40.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 4.0e-154 549.7 840 40.0
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 6.9e-154 548.9 656 45.6
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 9.0e-154 548.5 794 41.7
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 9.0e-154 548.5 716 46.2
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.2e-153 548.1 810 41.5
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 2.6e-153 547.0 645 47.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 3.4e-153 546.6 867 40.4
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.8e-153 545.8 810 41.4
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.0e-152 545.0 655 45.2
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-152 544.7 810 41.2
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.7e-152 544.3 760 43.0
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-152 544.3 760 43.0
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 4.9e-152 542.7 868 40.3
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.4e-151 541.2 538 53.7
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 1.2e-150 538.1 808 41.1
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.0e-149 535.0 678 43.8
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.8e-149 534.3 947 38.6
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.8e-147 526.9 889 39.9
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.8e-146 524.2 812 41.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 3.2e-143 513.5 799 40.8
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.3e-139 499.2 896 39.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.0e-136 491.9 603 45.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.2e-129 468.4 663 40.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 3.8e-120 436.8 673 40.0
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.0e-120 436.4 705 38.9
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.5e-120 436.0 705 38.6
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 9.4e-119 432.2 353 62.0
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.0e-112 409.8 474 47.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.0e-112 409.8 474 47.9
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.2e-110 405.2 774 35.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.2e-107 394.4 792 37.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 5.5e-103 379.8 629 40.9
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 9.4e-103 379.0 711 36.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.6e-102 378.3 524 43.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.7e-102 376.7 665 38.9
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.4e-98 365.2 442 46.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.3e-96 357.8 334 56.3
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-95 355.1 659 37.0
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-95 355.1 659 37.0
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 9.5e-95 352.4 633 37.8
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.2e-93 346.7 633 37.3
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-90 338.2 564 40.1
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.3e-87 327.4 274 55.8
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.9e-82 311.6 798 31.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 2.0e-76 291.6 802 30.8
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.2e-70 272.3 246 56.1
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.3e-63 247.7 790 29.0
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.0e-61 240.7 484 34.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.4e-60 237.7 299 45.5
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.2e-59 235.0 222 52.7
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-56 225.7 343 38.5
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 4.3e-55 220.7 516 35.1
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.8e-54 218.0 485 34.6
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.4e-50 205.7 141 68.1
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 3.4e-44 184.5 344 38.1
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 4.9e-43 180.6 141 58.9
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.1e-42 176.8 152 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 4.6e-41 174.1 333 36.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 4.6e-41 174.1 119 67.2
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 2.3e-40 171.8 176 52.3
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 6.7e-40 170.2 197 45.2
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 7.4e-39 166.8 369 35.8
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 4.8e-38 164.1 257 39.3
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.2e-36 159.5 117 63.2
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.0e-36 158.7 211 44.5
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 4.5e-36 157.5 91 90.1
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-34 152.9 230 39.1
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.9e-34 152.1 175 46.3
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.6e-33 147.5 268 39.2
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 6.0e-33 147.1 121 57.9
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.1e-29 136.3 418 28.2
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.4e-29 136.0 211 42.2
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 5.5e-26 124.0 149 44.3
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-26 124.0 102 52.0
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-26 124.0 102 52.0
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 8.7e-24 116.7 133 44.4
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 7.4e-23 113.6 114 45.6
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.7e-22 111.3 295 35.6
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 3.8e-19 101.3 84 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.5e-19 100.5 130 40.8
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.9e-18 99.0 87 59.8
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.5e-18 98.6 84 50.0
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-18 97.4 84 50.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 5.5e-18 97.4 84 50.0
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 2.7e-17 95.1 704 19.6
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 6.1e-17 94.0 87 58.6
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.0e-16 93.2 181 37.0
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 3.9e-16 91.3 293 27.6
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-15 89.4 87 46.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 4.8e-14 84.3 74 50.0
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-13 83.2 74 48.6
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.4e-13 82.0 60 61.7
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.7e-11 75.9 82 45.1
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-10 73.2 56 60.7
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.4e-10 72.8 75 46.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.4e-10 72.8 174 32.8
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.5e-10 70.9 66 45.5
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.6e-09 69.3 281 32.0
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 1.4e-08 66.2 262 27.9
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 5.7e-07 60.8 54 48.1


User provided reference genes

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