Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 1.6e-134 482.6 231 100.0
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 2.3e-128 462.2 227 98.2
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.3e-115 419.9 227 88.1
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.3e-112 409.1 225 88.0
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.7e-112 407.5 227 86.8
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 3.4e-108 395.2 227 83.3
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 3.8e-99 365.2 227 74.9
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.0e-95 352.8 229 71.2
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 7.0e-93 344.4 228 69.3
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 2.7e-92 342.4 227 69.6
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 4.5e-92 341.7 227 70.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 7.7e-92 340.9 227 68.7
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 1.1e-90 337.0 229 68.6
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 3.6e-89 332.0 229 69.0
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 3.6e-89 332.0 224 70.1
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 3.6e-89 332.0 225 66.7
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.0e-88 330.5 225 67.6
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 8.8e-88 327.4 224 68.3
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 3.4e-87 325.5 224 66.1
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 3.4e-87 325.5 224 69.2
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 4.4e-87 325.1 225 65.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 5.7e-87 324.7 225 67.1
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.7e-86 323.2 229 64.6
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 1.7e-86 323.2 226 66.8
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 2.8e-86 322.4 226 67.7
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 6.3e-86 321.2 227 66.5
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 2.4e-85 319.3 225 66.2
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 7.0e-85 317.8 229 65.9
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 7.0e-85 317.8 224 66.5
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.2e-84 317.0 225 66.2
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.2e-84 317.0 225 64.0
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.6e-84 316.6 224 66.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.6e-84 316.6 225 63.1
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 2.0e-84 316.2 224 66.5
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 2.7e-84 315.8 225 64.9
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 4.5e-84 315.1 225 65.3
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 7.7e-84 314.3 225 64.9
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.0e-83 313.9 247 61.9
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.7e-83 313.2 225 65.3
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.7e-83 313.2 220 65.9
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 2.3e-83 312.8 223 64.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.9e-83 312.4 225 65.8
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 8.6e-83 310.8 230 64.8
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.1e-82 310.5 225 64.0
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.2e-81 307.0 228 64.5
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 2.3e-80 302.8 225 64.9
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 3.0e-80 302.4 223 62.8
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 3.0e-80 302.4 224 62.1
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 4.0e-80 302.0 223 62.8
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 8.9e-80 300.8 224 61.6
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.4e-79 298.9 223 62.3
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 7.5e-79 297.7 226 59.3
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.7e-78 296.6 225 60.9
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.2e-78 296.2 227 61.7
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.2e-78 296.2 227 61.7
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.2e-78 296.2 227 61.7
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 3.7e-78 295.4 224 60.3
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.1e-77 293.9 226 62.8
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 7.0e-77 291.2 224 61.2
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 3.5e-76 288.9 238 60.9
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 3.8e-75 285.4 237 58.2
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 6.6e-75 284.6 228 59.2
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.1e-73 279.6 253 54.2
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 4.4e-71 271.9 226 56.6
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 9.8e-71 270.8 183 69.4
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.7e-70 270.0 225 58.2
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 4.9e-70 268.5 183 71.0
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 1.1e-69 267.3 223 56.1
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.7e-67 260.0 264 49.2
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.6e-67 258.1 189 64.0
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 5.6e-66 255.0 238 52.1
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.2e-65 253.8 182 64.3
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.1e-65 253.1 218 53.7
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.4e-64 250.4 225 56.0
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 7.5e-63 244.6 175 64.6
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.3e-62 243.8 218 51.8
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 1.7e-62 243.4 188 61.7
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.2e-62 243.0 224 53.1
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.4e-61 240.4 171 66.7
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 6.0e-60 235.0 185 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 2.3e-56 223.0 232 47.0
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 6.0e-52 208.4 276 42.0
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 5.8e-47 191.8 139 62.6
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 3.8e-46 189.1 229 42.4
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.9e-45 186.8 250 41.2
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 2.1e-44 183.3 92 95.7
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.7e-44 183.0 128 64.1
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 2.5e-42 176.4 223 40.4
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 9.6e-42 174.5 132 62.1
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 2.0e-39 166.8 227 40.5
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 2.9e-38 162.9 156 55.8
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.8e-38 162.5 110 65.5
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 2.4e-37 159.8 137 58.4
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.3e-35 153.3 231 35.1
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 4.5e-31 139.0 252 33.7
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 1.2e-28 131.0 84 73.8
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.3e-27 127.5 93 60.2
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.5e-18 97.4 175 32.0
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.2e-15 87.8 89 50.6
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 9.3e-13 78.2 82 47.6
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.3e-09 67.8 79 43.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.7e-09 66.2 247 27.5
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 4.8e-09 65.9 201 27.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 6.3e-09 65.5 232 28.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.2e-09 65.1 236 26.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 8.2e-09 65.1 242 26.9
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.8e-08 63.9 240 27.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.4e-08 63.5 179 27.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 4.1e-08 62.8 219 27.4
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 9.0e-08 61.6 39 66.7
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.2e-07 61.2 44 56.8
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.5e-07 60.8 179 27.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.5e-07 60.8 248 27.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.6e-07 60.1 179 27.9
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.6e-07 60.1 255 25.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 4.5e-07 59.3 243 27.2
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.7e-07 58.5 189 28.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.0e-06 58.2 205 27.8
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.3e-06 57.8 206 26.2
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.3e-06 57.8 232 28.0
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.3e-06 57.8 233 24.5
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 2.2e-06 57.0 246 27.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.2e-06 57.0 240 22.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.9e-06 56.6 239 26.4
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 6.5e-06 55.5 237 23.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 8.5e-06 55.1 171 26.3
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 8.5e-06 55.1 244 27.5


User provided reference genes

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