Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.5e-135 486.1 230 100.0
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 2.9e-123 445.3 210 100.0
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 2.4e-122 442.2 208 100.0
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.9e-115 418.7 210 93.8
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.5e-114 414.5 210 92.4
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.0e-112 410.2 210 91.4
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 6.3e-110 401.0 210 89.5
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.5e-106 389.0 209 84.2
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 5.5e-106 387.9 210 85.2
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.6e-105 385.2 208 85.1
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 3.9e-104 381.7 209 83.3
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 3.9e-104 381.7 209 82.8
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.1e-104 381.3 209 84.7
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-103 380.2 209 84.7
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.1e-103 380.2 209 83.7
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.9e-103 379.4 209 83.7
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.3e-103 378.6 209 82.3
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 3.3e-103 378.6 209 82.3
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.3e-103 378.3 209 82.3
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.3e-102 376.7 208 83.7
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.7e-102 376.3 209 81.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.8e-102 375.6 209 83.3
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 2.8e-102 375.6 209 80.9
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.8e-102 375.6 210 83.8
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 2.8e-102 375.6 202 84.7
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 6.3e-102 374.4 209 84.2
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 8.2e-102 374.0 209 81.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.1e-101 373.6 209 80.4
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.8e-101 372.9 209 82.8
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 1.8e-101 372.9 206 84.0
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 2.4e-101 372.5 209 81.3
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 3.1e-101 372.1 208 82.7
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 4.1e-101 371.7 209 81.8
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 4.1e-101 371.7 208 80.8
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 5.3e-101 371.3 209 80.9
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 6.9e-101 370.9 208 81.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.1e-101 370.5 209 82.8
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 9.1e-101 370.5 209 80.9
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 9.1e-101 370.5 208 80.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.2e-100 370.2 209 81.3
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.2e-100 370.2 208 81.7
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.2e-100 370.2 209 79.9
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.5e-100 369.8 209 79.4
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 3.4e-100 368.6 208 80.8
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 3.4e-100 368.6 208 80.8
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.4e-100 368.6 208 81.7
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 4.5e-100 368.2 208 81.7
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 7.7e-100 367.5 209 83.3
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.0e-99 367.1 209 81.8
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.3e-99 366.7 210 80.5
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.3e-99 366.7 208 80.3
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.7e-99 366.3 209 81.3
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 1.7e-99 366.3 208 81.2
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 2.9e-99 365.5 208 81.2
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.9e-99 365.5 208 82.2
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.9e-99 365.5 209 80.4
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 3.8e-99 365.2 208 81.2
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 5.0e-99 364.8 207 80.2
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 5.0e-99 364.8 209 78.0
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.4e-98 363.2 212 77.8
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 2.5e-98 362.5 208 81.2
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.2e-98 362.1 208 81.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 4.2e-98 361.7 208 79.8
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 4.2e-98 361.7 206 80.1
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 5.5e-98 361.3 208 79.8
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 9.4e-98 360.5 202 81.7
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.2e-97 360.1 208 79.3
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.6e-97 359.8 208 78.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.1e-97 359.4 207 80.7
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 2.1e-97 359.4 208 79.8
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 3.6e-97 358.6 206 79.6
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.6e-97 358.6 209 78.5
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.7e-97 358.2 207 79.7
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.1e-97 357.8 208 80.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 7.9e-97 357.5 208 76.4
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.0e-96 357.1 208 79.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 1.0e-96 357.1 209 76.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 1.4e-96 356.7 204 80.4
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.8e-96 356.3 204 79.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 1.8e-96 356.3 204 79.9
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.8e-96 356.3 209 78.0
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 2.3e-96 355.9 206 79.6
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 3.0e-96 355.5 208 78.4
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 3.0e-96 355.5 231 73.6
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 3.9e-96 355.1 209 78.0
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 3.9e-96 355.1 209 78.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 6.7e-96 354.4 206 78.6
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 8.8e-96 354.0 206 79.6
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.1e-95 353.6 208 78.8
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.6e-95 352.4 217 79.3
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.3e-95 352.1 204 79.4
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 3.3e-95 352.1 193 82.9
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 3.3e-95 352.1 229 72.5
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 5.7e-95 351.3 208 76.9
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 2.2e-94 349.4 209 76.6
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 2.2e-94 349.4 199 80.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 3.7e-94 348.6 206 75.7
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 3.7e-94 348.6 206 77.7
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.4e-93 346.7 208 76.9
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.4e-93 346.7 199 80.4
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.8e-93 346.3 209 75.6
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 4.1e-93 345.1 204 78.9
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.5e-92 343.2 198 80.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.5e-92 343.2 198 80.3
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.5e-92 341.7 198 79.8
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.1e-90 337.0 295 59.3
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.2e-89 333.6 204 73.0
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 2.1e-89 332.8 209 72.2
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 6.1e-89 331.3 205 71.2
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.9e-88 328.6 208 72.1
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 2.6e-87 325.9 249 66.3
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 9.7e-87 323.9 209 73.7
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 6.3e-86 321.2 207 69.6
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-85 320.1 207 70.0
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.4e-85 319.3 166 86.7
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 7.0e-85 317.8 201 69.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 5.9e-84 314.7 174 85.1
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.6e-81 306.6 199 73.4
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 4.0e-80 302.0 169 83.4
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.2e-71 273.9 424 40.3
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 7.0e-69 264.6 145 81.4
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 2.7e-68 262.7 157 76.4
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.3e-67 259.6 145 78.6
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.1e-65 253.1 208 59.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.4e-64 250.4 171 69.6
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.4e-55 219.2 140 70.0
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 8.3e-54 214.5 113 84.1
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.3e-51 207.2 209 48.8
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.3e-46 190.7 109 82.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 3.2e-45 186.0 185 49.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 4.1e-45 185.7 125 68.8
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.6e-39 166.4 92 79.3
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 6.4e-38 161.8 98 79.6
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 8.3e-38 161.4 145 55.2
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 3.2e-37 159.5 193 42.0
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 3.9e-35 152.5 95 75.8
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.9e-34 150.2 74 87.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 1.7e-30 137.1 79 81.0
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 5.8e-23 112.1 74 73.0
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 5.4e-21 105.5 65 76.9
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 6.0e-20 102.1 63 77.8
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 7.8e-20 101.7 72 69.4
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 5.6e-18 95.5 60 76.7
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.1e-10 71.2 35 82.9
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 1.9e-10 70.5 40 82.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 9.6e-10 68.2 60 65.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 6.2e-09 65.5 35 80.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.0e-08 62.8 32 87.5


User provided reference genes

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