Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 3.5e-101 372.1 196 100.0
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.3e-100 370.2 196 99.5
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.4e-97 360.1 196 97.4
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 6.6e-92 341.3 197 92.4
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 9.5e-91 337.4 184 92.4
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 1.0e-84 317.4 195 86.7
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.5e-72 276.9 196 74.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.1e-69 266.5 196 69.4
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 4.6e-69 265.4 182 74.2
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.3e-68 263.8 195 73.8
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.7e-68 263.5 179 75.4
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.3e-68 263.1 196 73.0
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 3.9e-68 262.3 179 76.0
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 5.1e-68 261.9 195 68.7
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.5e-67 260.4 174 74.7
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.5e-67 260.4 183 72.7
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 1.5e-67 260.4 183 72.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.3e-67 259.2 168 78.0
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.6e-66 256.9 176 73.9
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.6e-66 256.9 174 74.7
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.6e-66 256.9 183 71.0
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.6e-66 256.9 174 74.1
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 2.1e-66 256.5 174 73.6
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 3.6e-66 255.8 194 67.5
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.6e-66 255.8 183 71.0
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 6.2e-66 255.0 183 71.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.1e-66 254.6 183 69.9
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 8.1e-66 254.6 183 69.9
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 8.1e-66 254.6 196 69.4
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.4e-65 253.1 144 84.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.4e-65 253.1 144 83.3
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.4e-65 253.1 176 71.6
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 3.1e-65 252.7 185 72.4
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 4.0e-65 252.3 177 72.3
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 4.0e-65 252.3 182 73.1
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 5.2e-65 251.9 153 90.2
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 6.9e-65 251.5 178 74.2
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 6.9e-65 251.5 178 74.2
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.2e-64 250.8 197 71.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.2e-64 250.8 185 71.4
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.5e-64 250.4 176 72.2
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.0e-64 250.0 184 69.6
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 3.4e-64 249.2 183 69.9
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.4e-64 248.8 178 73.0
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 4.4e-64 248.8 183 71.6
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 7.6e-64 248.1 183 69.9
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 7.6e-64 248.1 179 72.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 9.9e-64 247.7 193 69.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.3e-63 247.3 145 83.4
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 1.3e-63 247.3 183 72.1
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.3e-63 247.3 185 69.7
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.2e-63 246.5 185 71.9
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.4e-63 245.0 185 71.4
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 2.4e-62 243.0 192 65.6
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 4.2e-62 242.3 144 79.9
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 5.4e-62 241.9 187 69.5
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 5.4e-62 241.9 179 67.0
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 7.1e-62 241.5 191 68.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 3.5e-61 239.2 134 85.8
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.3e-60 237.3 144 78.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 1.7e-60 236.9 159 73.0
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 2.3e-60 236.5 186 69.4
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 6.6e-60 235.0 196 66.3
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 5.6e-59 231.9 187 64.2
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 9.6e-59 231.1 183 63.9
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 9.6e-59 231.1 183 63.4
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 9.6e-59 231.1 183 63.4
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 9.6e-59 231.1 144 79.2
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.3e-58 230.7 161 73.3
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.6e-58 230.3 144 78.5
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 3.6e-58 229.2 183 62.3
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 3.6e-58 229.2 183 62.3
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 4.8e-58 228.8 183 63.4
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 8.1e-58 228.0 165 70.3
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.1e-57 227.6 144 78.5
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.8e-57 226.9 192 60.9
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.8e-57 226.9 194 64.4
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 3.1e-57 226.1 183 62.8
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 3.1e-57 226.1 132 82.6
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 9.0e-57 224.6 185 61.6
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.5e-56 223.8 167 68.9
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.0e-56 223.4 178 66.9
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.4e-56 222.6 128 82.0
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 4.5e-56 222.2 155 72.9
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 4.5e-56 222.2 145 77.2
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 7.6e-56 221.5 245 51.8
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.7e-55 220.3 134 78.4
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.7e-55 220.3 183 67.2
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 2.2e-55 219.9 196 63.8
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 9.6e-51 204.5 199 54.8
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.2e-45 187.6 183 58.5
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 7.4e-43 178.3 132 68.2
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.1e-42 176.8 136 61.0
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 8.2e-42 174.9 91 91.2
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 8.2e-42 174.9 179 52.5
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.2e-40 171.0 186 51.6
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 2.5e-38 163.3 130 67.7
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 9.3e-38 161.4 139 64.7
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.4e-33 146.7 189 46.0
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 4.5e-32 142.5 182 48.4
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 6.1e-29 132.1 131 55.7
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 6.1e-29 132.1 132 62.9
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 6.1e-29 132.1 132 62.9
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 8.7e-28 128.3 147 49.0
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 7.4e-19 98.6 65 78.5
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.2e-18 97.1 107 57.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.8e-17 94.0 117 53.0
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 5.3e-17 92.4 104 55.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 3.4e-16 89.7 106 43.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 3.2e-14 83.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 3.1e-09 66.6 59 55.9
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 3.1e-09 66.6 37 86.5
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 1.6e-08 64.3 31 80.6
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.3e-07 61.2 31 77.4
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 9.4e-06 55.1 118 40.7


User provided reference genes

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