Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 2.4e-251 871.7 441 100.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.0e-249 866.3 441 99.3
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.9e-241 838.2 441 95.7
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.7e-204 716.1 443 81.5
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 2.6e-189 665.6 447 75.8
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 5.4e-187 657.9 442 76.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.2e-186 656.8 442 76.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 6.1e-138 495.0 436 61.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 8.0e-138 494.6 448 60.5
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.0e-137 492.7 444 60.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 4.1e-134 482.3 440 58.2
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 3.5e-133 479.2 442 58.4
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 3.2e-131 472.6 445 58.2
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.7e-130 469.5 433 58.0
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.1e-130 468.4 446 58.1
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 8.0e-130 468.0 448 59.2
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.0e-130 468.0 445 57.3
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 1.8e-129 466.8 446 57.0
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 5.2e-129 465.3 441 56.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.2e-129 465.3 441 56.0
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.0e-128 463.4 445 56.9
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 3.4e-128 462.6 442 57.5
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 5.7e-128 461.8 446 56.7
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 9.8e-128 461.1 445 57.3
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 6.3e-127 458.4 451 57.4
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 8.3e-127 458.0 406 58.9
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.1e-126 457.6 451 55.9
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.4e-126 456.4 442 55.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 7.0e-126 454.9 451 55.4
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.0e-126 454.9 445 56.6
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-125 454.1 376 62.0
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 7.7e-125 451.4 448 58.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 7.7e-125 451.4 434 54.8
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 7.7e-125 451.4 448 56.2
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.0e-124 451.1 454 56.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.3e-124 449.9 452 57.7
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 8.6e-124 448.0 452 57.5
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.5e-123 447.2 454 56.2
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 1.9e-123 446.8 407 58.2
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 7.2e-123 444.9 402 58.7
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.1e-122 443.4 443 56.4
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 3.6e-122 442.6 433 57.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 6.8e-121 438.3 458 55.2
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.0e-120 436.8 448 54.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.0e-120 436.8 454 53.5
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 2.6e-120 436.4 435 54.0
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 2.6e-120 436.4 450 55.6
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 3.4e-120 436.0 445 57.1
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 6.3e-119 431.8 447 55.9
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.1e-118 431.0 425 55.8
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.1e-118 431.0 465 53.3
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 5.4e-118 428.7 448 55.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.5e-117 425.6 442 55.0
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 5.9e-117 425.2 437 55.6
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.3e-116 423.3 385 56.9
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 2.9e-116 422.9 432 54.2
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.9e-116 422.9 381 58.3
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-115 420.6 448 53.6
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.9e-115 420.2 448 53.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.9e-115 420.2 454 51.1
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 5.6e-115 418.7 448 53.1
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 5.6e-115 418.7 448 53.1
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 9.5e-115 417.9 448 53.1
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 8.0e-114 414.8 389 56.8
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 8.0e-114 414.8 425 53.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 5.2e-113 412.1 445 50.8
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.2e-112 411.0 434 50.0
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.5e-112 410.6 407 55.3
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.5e-112 410.6 434 50.0
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 4.4e-112 409.1 444 52.3
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.9e-111 405.6 446 52.5
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 4.9e-111 405.6 449 51.7
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 3.2e-110 402.9 412 54.6
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 2.7e-109 399.8 419 52.3
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.0e-109 398.7 426 52.1
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.3e-108 396.7 444 51.6
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.3e-107 392.5 447 49.9
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 5.6e-107 392.1 406 53.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 9.5e-107 391.3 446 50.4
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.8e-106 389.8 405 53.6
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.6e-106 389.4 443 50.3
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.8e-105 387.1 457 50.3
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.3e-105 386.7 446 51.1
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.1e-105 386.3 446 51.1
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 6.8e-105 385.2 451 49.9
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 8.9e-105 384.8 452 50.9
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.5e-104 384.0 444 50.2
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 2.0e-104 383.6 439 50.1
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.7e-103 380.6 456 48.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.2e-103 380.2 446 49.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 4.9e-103 379.0 447 48.3
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.0e-100 371.3 446 47.5
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.3e-100 370.9 373 58.4
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 3.9e-100 369.4 447 48.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 3.9e-100 369.4 447 48.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.3e-99 365.2 445 47.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.4e-96 355.9 377 52.3
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 5.8e-96 355.5 443 48.8
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 3.7e-95 352.8 332 57.8
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.4e-94 350.1 331 55.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.2e-94 349.7 318 57.2
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 8.9e-89 331.6 331 53.8
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.6e-88 330.1 431 45.7
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.8e-88 328.9 411 47.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.0e-84 318.2 339 54.6
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 4.8e-82 309.3 447 44.7
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.7e-76 290.8 425 44.5
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 5.1e-76 289.3 366 47.3
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 9.9e-72 275.0 449 39.9
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 5.4e-70 269.2 325 51.1
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 7.4e-67 258.8 394 39.6
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.8e-65 254.2 452 42.3
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 2.9e-63 246.9 244 54.1
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 9.6e-59 231.9 217 54.8
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.4e-57 228.0 206 58.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.8e-56 222.6 401 37.4
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 5.5e-54 216.1 299 46.8
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 4.6e-53 213.0 384 37.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 3.3e-51 206.8 237 47.3
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.7e-50 203.4 414 34.8
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 1.9e-46 191.0 453 34.2
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 2.0e-24 117.9 413 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 6.8e-20 102.8 297 32.7
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 5.7e-19 99.8 383 25.8
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 6.3e-18 96.3 407 27.3
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.1e-17 95.5 97 54.6
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.4e-17 95.1 169 37.3
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.2e-15 87.8 163 32.5
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.8e-12 78.2 225 28.0
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 9.2e-09 65.9 86 40.7


User provided reference genes

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