Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 8.4e-48 193.4 97 100.0
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 1.5e-44 182.6 98 95.9
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.5e-44 182.6 98 94.9
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 1.2e-33 146.4 99 78.8
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 7.9e-30 133.7 97 75.3
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 5.1e-29 131.0 97 74.2
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.1e-28 129.8 97 75.3
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.1e-22 109.0 101 63.4
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 4.8e-19 97.8 97 54.6
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 8.2e-19 97.1 91 56.0
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 5.3e-18 94.4 100 53.0
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 6.9e-18 94.0 97 53.6
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 9.0e-18 93.6 97 53.6
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.2e-17 93.2 97 51.5
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.5e-17 92.8 89 57.3
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 2.0e-17 92.4 89 52.8
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 2.6e-17 92.0 99 49.5
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 2.6e-17 92.0 97 52.6
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 5.8e-17 90.9 96 51.0
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 1.0e-16 90.1 93 52.7
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.3e-16 89.7 91 54.9
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 2.2e-16 89.0 99 52.5
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 2.9e-16 88.6 94 50.0
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 3.8e-16 88.2 99 46.5
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 3.8e-16 88.2 96 49.0
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 4.9e-16 87.8 102 49.0
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 6.5e-16 87.4 101 49.5
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 8.4e-16 87.0 109 46.8
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.1e-15 86.7 99 47.5
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.1e-15 86.7 65 61.5
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.1e-15 86.7 65 61.5
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 3.2e-15 85.1 96 51.0
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 3.2e-15 85.1 92 47.8
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 4.2e-15 84.7 92 52.2
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 7.1e-15 84.0 96 47.9
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 7.1e-15 84.0 90 52.2
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 9.3e-15 83.6 99 45.5
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 9.3e-15 83.6 99 45.5
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 9.3e-15 83.6 102 48.0
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 1.2e-14 83.2 94 52.1
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.2e-14 83.2 93 50.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.6e-14 82.8 97 46.4
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 2.1e-14 82.4 114 44.7
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 2.1e-14 82.4 90 51.1
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 3.5e-14 81.6 84 48.8
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 6.0e-14 80.9 87 50.6
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 6.0e-14 80.9 93 47.3
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 1.3e-13 79.7 94 50.0
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 2.3e-13 79.0 92 48.9
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 3.0e-13 78.6 97 47.4
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 3.9e-13 78.2 96 45.8
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 5.1e-13 77.8 99 46.5
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 6.7e-13 77.4 104 44.2
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 1.1e-12 76.6 83 49.4
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.3e-11 73.2 103 45.6
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 1.3e-11 73.2 77 49.4
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.6e-11 72.8 85 47.1
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.8e-11 72.0 60 56.7
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.8e-11 71.2 60 55.0
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 6.3e-11 70.9 91 44.0
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 1.4e-10 69.7 98 41.8
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 3.4e-09 65.1 91 44.0
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 3.4e-09 65.1 97 40.2
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 3.4e-09 65.1 47 63.8
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 7.6e-09 63.9 102 41.2
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 7.6e-09 63.9 50 60.0
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 1.0e-08 63.5 47 66.0
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 1.7e-08 62.8 97 44.3
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 1.7e-08 62.8 95 38.9
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 1.7e-08 62.8 95 38.9
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 2.9e-08 62.0 101 42.6
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 2.9e-08 62.0 95 37.9
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 2.9e-08 62.0 95 37.9
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 3.8e-08 61.6 97 40.2
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 3.8e-08 61.6 47 57.4
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 6.5e-08 60.8 101 41.6
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 6.5e-08 60.8 54 55.6
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 1.1e-07 60.1 51 56.9
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 1.9e-07 59.3 92 39.1
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 1.9e-07 59.3 105 42.9
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 3.2e-07 58.5 99 41.4
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 3.2e-07 58.5 51 51.0
Psat5g082600 Pisum sativum HOM05D009255 ORTHO05D011239 5.5e-07 57.8 66 47.0
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 7.2e-07 57.4 99 39.4
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 7.2e-07 57.4 99 39.4
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 9.3e-07 57.0 93 36.6
Haze_25223 Corylus avellana HOM05D008093 ORTHO05D009840 2.7e-06 55.5 68 47.1
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 6.1e-06 54.3 58 44.8
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 7.9e-06 53.9 87 36.8


User provided reference genes

Program Settings