Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 2.8e-239 831.6 449 100.0
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 6.5e-236 820.5 449 98.9
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 3.6e-226 788.1 455 94.9
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 2.3e-201 705.7 449 87.1
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 8.0e-178 627.5 479 75.6
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 9.8e-176 620.5 449 72.4
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 6.6e-172 607.8 456 75.4
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.3e-163 578.9 454 71.6
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 3.6e-162 575.5 455 71.4
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 8.1e-162 574.3 460 70.2
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.1e-161 573.9 463 63.7
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-161 573.5 454 69.8
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 3.1e-161 572.4 459 71.0
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 2.6e-160 569.3 468 69.2
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 7.5e-160 567.8 480 64.4
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 9.9e-160 567.4 460 65.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 4.9e-159 565.1 464 69.2
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 2.4e-158 562.8 454 63.0
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 2.4e-158 562.8 452 71.5
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 9.2e-158 560.8 452 69.7
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 2.1e-157 559.7 451 61.9
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 2.1e-157 559.7 453 70.0
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 4.6e-157 558.5 466 60.5
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.3e-156 556.2 431 72.9
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 3.9e-156 555.4 455 69.7
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.6e-156 554.7 460 67.2
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 8.6e-156 554.3 453 68.9
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 8.6e-156 554.3 466 63.9
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 1.9e-155 553.1 427 71.9
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 2.5e-155 552.7 484 66.3
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 3.3e-155 552.4 452 69.0
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.3e-155 552.0 452 64.6
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 7.3e-155 551.2 455 68.6
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 7.3e-155 551.2 457 68.3
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 1.6e-154 550.1 475 60.8
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 3.6e-154 548.9 432 64.6
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.8e-153 546.6 452 69.0
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.1e-153 545.8 529 55.6
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.8e-153 544.7 453 62.0
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.2e-152 543.9 454 62.8
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.0e-152 543.1 453 62.0
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 4.9e-151 538.5 476 58.4
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 1.9e-150 536.6 453 66.4
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 2.4e-150 536.2 480 65.4
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 2.4e-150 536.2 393 75.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 5.4e-150 535.0 451 69.2
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 7.1e-150 534.6 462 66.2
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 7.1e-150 534.6 508 57.1
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 3.5e-149 532.3 501 57.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 3.5e-149 532.3 482 63.3
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 6.6e-148 528.1 468 57.9
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 1.1e-147 527.3 458 59.6
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 4.3e-147 525.4 467 64.7
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 5.6e-147 525.0 487 58.9
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 7.3e-147 524.6 487 56.9
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.6e-146 523.5 487 62.8
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 2.8e-146 522.7 483 62.5
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 2.8e-146 522.7 472 58.7
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 1.1e-145 520.8 484 56.0
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 2.6e-144 516.2 466 58.6
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 4.4e-144 515.4 488 55.3
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 4.4e-144 515.4 488 55.3
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 3.8e-143 512.3 470 63.8
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 3.8e-143 512.3 495 54.7
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.4e-142 510.4 424 62.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 2.1e-141 506.5 427 59.5
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.5e-139 500.4 494 59.5
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.5e-139 499.6 399 60.9
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 9.6e-139 497.7 428 57.9
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.2e-138 495.0 456 56.6
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.1e-137 494.2 423 58.4
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 9.0e-137 491.1 420 58.8
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 6.4e-135 485.0 400 60.8
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.2e-134 482.6 483 60.5
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 2.1e-133 479.9 426 57.0
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.7e-133 479.6 440 56.6
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 3.5e-133 479.2 471 56.1
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 3.5e-133 479.2 487 58.9
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.0e-132 477.6 482 58.3
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 3.0e-132 476.1 421 57.2
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.6e-130 470.3 410 57.3
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 3.7e-130 469.2 483 52.4
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 3.7e-130 469.2 471 55.2
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 4.0e-129 465.7 464 54.3
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 4.5e-128 462.2 455 60.4
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.4e-127 458.4 401 59.6
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 8.4e-127 458.0 400 59.0
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 4.2e-126 455.7 448 53.3
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 6.0e-125 451.8 399 55.6
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.9e-123 446.8 399 66.2
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 3.3e-123 446.0 329 75.7
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 6.2e-122 441.8 453 59.6
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 1.1e-121 441.0 398 65.1
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 2.2e-119 433.3 487 48.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.8e-119 432.6 429 52.4
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.5e-119 431.8 373 59.0
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 4.6e-117 425.6 467 55.7
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.3e-116 424.1 420 52.9
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.3e-116 424.1 421 52.7
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.5e-115 420.6 456 58.8
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 7.2e-110 401.7 452 50.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.2e-109 401.0 400 61.5
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.4e-108 397.5 400 61.2
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.2e-103 380.2 398 59.3
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 1.0e-100 371.3 395 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 5.3e-97 359.0 461 50.8
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.3e-97 359.0 387 52.2
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 2.9e-95 353.2 405 47.4
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 3.6e-93 346.3 282 61.0
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 5.0e-79 299.3 397 43.1
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.1e-70 271.6 249 67.1
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 4.4e-67 259.6 298 47.7
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 8.3e-66 255.4 469 43.3
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 8.3e-66 255.4 469 43.3
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 7.8e-64 248.8 259 51.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.5e-62 243.8 206 64.1
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 1.9e-57 227.6 448 33.5
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 3.2e-57 226.9 206 59.2
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 2.3e-55 220.7 203 59.6
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 1.6e-45 188.0 108 77.8
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 3.6e-45 186.8 174 56.9
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 6.2e-45 186.0 177 57.6
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 1.5e-43 181.4 239 44.8
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 2.9e-42 177.2 476 28.4
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 8.3e-42 175.6 145 59.3
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 6.6e-39 166.0 207 48.3
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 6.4e-34 149.4 150 50.0
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.4e-28 131.7 245 33.9
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 9.9e-27 125.6 81 67.9
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.7e-26 124.8 110 61.8
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 4.9e-26 123.2 107 58.9
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-25 121.7 81 64.2
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 1.0e-23 115.5 75 68.0
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 3.0e-23 114.0 464 24.8
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 7.3e-22 109.4 370 24.9
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 6.4e-18 96.3 67 62.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.3e-17 92.4 84 53.6
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 1.8e-15 88.2 262 30.2
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 1.8e-15 88.2 376 24.7
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.0e-12 77.0 409 22.0
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.0e-12 77.0 409 22.0
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 9.0e-12 75.9 411 20.9
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 9.0e-12 75.9 404 21.8
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 2.0e-11 74.7 448 21.0
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 2.6e-11 74.3 39 74.4
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 3.4e-11 73.9 400 22.0
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 1.0e-10 72.4 401 21.4
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.3e-10 72.0 478 21.3
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 1.3e-10 72.0 253 26.1
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.7e-10 71.6 316 23.1
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 2.2e-10 71.2 81 44.4
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 3.8e-10 70.5 481 20.8
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.1e-09 68.9 477 21.2
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 1.1e-09 68.9 322 24.2
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 1.1e-09 68.9 75 44.0
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 1.4e-09 68.6 481 20.6
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 2.5e-09 67.8 253 25.7
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 3.2e-09 67.4 477 20.5
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 4.2e-09 67.0 481 20.2
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 4.2e-09 67.0 54 53.7
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 5.5e-09 66.6 311 24.1
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 7.1e-09 66.2 459 21.6
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.2e-08 65.5 254 24.4
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 1.2e-08 65.5 484 20.7
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 1.6e-08 65.1 454 21.6
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 2.7e-08 64.3 316 22.2
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 6.0e-08 63.2 460 20.0
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.0e-07 62.4 396 21.2
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 1.3e-07 62.0 49 53.1
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 5.7e-06 56.6 424 20.0


User provided reference genes

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