Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.0e-215 751.5 366 100.0
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 4.1e-204 714.5 366 95.4
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 2.2e-77 293.5 358 48.3
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 2.9e-77 293.1 370 47.0
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 8.5e-77 291.6 373 45.6
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.2e-76 289.7 370 45.4
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 4.7e-75 285.8 370 45.9
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.0e-74 284.6 370 45.7
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.1e-71 272.7 382 44.8
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.0e-71 271.9 360 48.1
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 3.5e-70 269.6 358 46.1
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 4.5e-70 269.2 351 44.7
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.7e-69 267.3 370 45.7
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 1.5e-68 264.2 371 43.7
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 5.5e-68 262.3 361 46.5
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.2e-67 261.2 361 46.3
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.6e-59 234.2 357 42.0
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 6.8e-58 228.8 376 40.2
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 3.5e-46 189.9 390 34.1
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 5.6e-44 182.6 386 32.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 9.5e-44 181.8 393 33.8
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.4e-39 167.9 365 32.9
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.7e-38 163.7 170 51.2
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 8.6e-37 158.7 374 30.7
CAN.G341.6 Capsicum annuum HOM05D003562 ORTHO05D002248 1.2e-33 148.3 368 33.2
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 1.2e-33 148.3 377 30.5
Nitab4.5_0004377g0030 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-28 131.7 154 46.8
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 3.3e-28 130.2 351 29.9
PGSC0003DMG400006032 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.2e-27 128.3 154 43.5
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 1.5e-25 121.3 171 40.4
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.5e-25 121.3 165 36.4
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 4.4e-25 119.8 180 39.4
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 5.8e-25 119.4 181 37.6
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.8e-25 119.4 169 35.5
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 9.9e-25 118.6 178 37.6
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 9.9e-25 118.6 169 36.7
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 1.3e-24 118.2 180 38.3
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.3e-24 118.2 180 37.2
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-24 117.9 179 39.1
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-24 117.9 179 39.1
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.7e-24 117.9 180 37.2
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 2.2e-24 117.5 166 40.4
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 2.9e-24 117.1 179 38.5
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 3.8e-24 116.7 179 37.4
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 3.8e-24 116.7 179 38.5
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 3.8e-24 116.7 166 40.4
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.8e-24 116.7 169 35.5
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.8e-24 116.7 169 35.5
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 4.9e-24 116.3 180 37.2
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 4.9e-24 116.3 168 38.7
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 6.4e-24 115.9 173 39.3
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 8.4e-24 115.5 179 36.9
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 8.4e-24 115.5 171 38.0
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 1.1e-23 115.2 170 37.1
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 1.4e-23 114.8 169 37.3
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 1.4e-23 114.8 175 40.0
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.4e-23 114.8 175 40.0
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.4e-23 114.8 167 35.9
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 1.9e-23 114.4 179 36.3
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 2.4e-23 114.0 166 38.0
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.4e-23 114.0 165 39.4
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 3.2e-23 113.6 167 37.1
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 3.2e-23 113.6 170 38.2
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 3.2e-23 113.6 170 36.5
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 3.2e-23 113.6 169 37.3
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 3.2e-23 113.6 173 37.6
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 5.4e-23 112.8 170 38.2
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 5.4e-23 112.8 166 37.3
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 5.4e-23 112.8 170 37.6
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 7.1e-23 112.5 172 37.2
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 7.1e-23 112.5 170 37.1
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 7.1e-23 112.5 382 27.0
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 9.2e-23 112.1 184 35.3
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 9.2e-23 112.1 170 38.8
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.2e-22 111.7 174 37.4
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.6e-22 111.3 170 37.1
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.6e-22 111.3 170 37.1
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.6e-22 111.3 170 37.1
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 2.1e-22 110.9 172 36.0
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 2.1e-22 110.9 172 34.9
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.7e-22 110.5 176 35.2
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 2.7e-22 110.5 169 36.7
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 3.5e-22 110.2 181 36.5
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 3.5e-22 110.2 179 35.8
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 3.5e-22 110.2 179 35.8
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 3.5e-22 110.2 168 36.9
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 4.6e-22 109.8 179 35.2
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 4.6e-22 109.8 179 35.2
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 4.6e-22 109.8 170 35.3
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 4.6e-22 109.8 177 35.6
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 4.6e-22 109.8 153 39.2
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 4.6e-22 109.8 169 35.5
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 4.6e-22 109.8 164 36.6
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 4.6e-22 109.8 179 35.2
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 6.0e-22 109.4 180 35.0
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 6.0e-22 109.4 169 37.3
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 6.0e-22 109.4 169 36.1
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 6.0e-22 109.4 180 35.0
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 7.8e-22 109.0 169 36.1
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 7.8e-22 109.0 180 35.6
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 7.8e-22 109.0 180 35.6
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 7.8e-22 109.0 180 35.6
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.0e-21 108.6 169 35.5
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.3e-21 108.2 170 32.4
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 1.3e-21 108.2 171 35.7
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 1.3e-21 108.2 172 36.6
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 1.7e-21 107.8 173 35.3
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 1.7e-21 107.8 173 34.7
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 2.3e-21 107.5 180 34.4
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 2.3e-21 107.5 172 36.0
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 2.3e-21 107.5 168 36.9
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.3e-21 107.5 168 36.9
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 3.0e-21 107.1 170 37.1
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 3.0e-21 107.1 181 35.9
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 3.9e-21 106.7 133 37.6
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 3.9e-21 106.7 169 33.7
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 3.9e-21 106.7 181 34.8
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 3.9e-21 106.7 179 34.1
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 3.9e-21 106.7 174 35.1
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.9e-21 106.7 188 35.1
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 3.9e-21 106.7 188 35.1
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.1e-21 106.3 128 41.4
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 5.1e-21 106.3 172 34.9
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 6.6e-21 105.9 173 32.4
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 6.6e-21 105.9 145 38.6
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 8.6e-21 105.5 163 34.4
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.1e-20 105.1 168 36.3
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 1.1e-20 105.1 173 32.4
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 1.5e-20 104.8 119 42.0
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 2.5e-20 104.0 170 34.7
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 3.3e-20 103.6 172 32.6
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 3.3e-20 103.6 170 33.5
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 4.3e-20 103.2 170 32.9
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 4.3e-20 103.2 171 33.9
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 7.3e-20 102.4 183 33.3
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 7.3e-20 102.4 138 35.5
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 7.3e-20 102.4 170 34.7
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 7.3e-20 102.4 174 35.6
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 7.3e-20 102.4 170 32.9
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 7.3e-20 102.4 173 33.5
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 9.6e-20 102.1 173 34.7
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 9.6e-20 102.1 170 34.1
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.1e-19 100.9 117 43.6
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.8e-19 100.5 194 32.0
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 3.6e-19 100.1 173 32.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.4e-18 98.2 174 33.3
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 3.1e-18 97.1 126 41.3
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 4.0e-18 96.7 169 35.5
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.2e-17 95.1 112 39.3
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 2.0e-17 94.4 114 38.6
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 3.4e-17 93.6 139 38.1
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 5.8e-17 92.8 99 43.4
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 5.8e-17 92.8 113 45.1
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.6e-17 92.4 175 34.3
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 9.9e-17 92.0 134 37.3
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 1.3e-16 91.7 172 31.4
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 2.2e-16 90.9 180 31.7
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 3.8e-16 90.1 132 35.6
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.1e-15 88.6 117 40.2
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 5.4e-15 86.3 120 31.7
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 9.3e-15 85.5 145 35.2
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 9.3e-15 85.5 179 31.3
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.2e-14 85.1 136 33.1
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 2.7e-14 84.0 80 46.2
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 4.6e-14 83.2 127 36.2
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 7.8e-14 82.4 168 32.7
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 1.5e-12 78.2 77 44.2
PGSC0003DMG400006031 Solanum tuberosum HOM05D003562 ORTHO05D395926 1.9e-12 77.8 80 58.8
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 7.3e-12 75.9 171 28.1
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 7.3e-12 75.9 181 30.4
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 1.3e-11 75.1 165 32.1
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 8.1e-11 72.4 97 36.1
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 5.3e-10 69.7 170 25.9
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 1.2e-09 68.6 84 35.7
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 2.6e-09 67.4 166 31.3
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 4.5e-09 66.6 118 36.4
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 1.3e-08 65.1 169 27.8
PGSC0003DMG400016924 Solanum tuberosum HOM05D003562 ORTHO05D051166 4.9e-08 63.2 71 52.1
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 1.1e-07 62.0 93 34.4
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 1.1e-07 62.0 119 31.1
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.1e-07 62.0 73 37.0
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 1.9e-07 61.2 53 47.2
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.4e-07 60.8 100 37.0
Dinv33286 Davidia involucrata HOM05D003562 ORTHO05D004074 3.2e-07 60.5 336 23.2
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 1.2e-06 58.5 173 26.0
HPP92_014864 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.6e-06 56.6 123 32.5


User provided reference genes

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