Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064990.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 6.2e-105 384.0 180 100.0
CAN.G1909.7 Capsicum annuum HOM05D000021 ORTHO05D000010 3.5e-39 165.6 142 61.3
CAN.G1909.9 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-37 160.6 122 65.6
CAN.G1909.10 Capsicum annuum HOM05D000021 ORTHO05D000010 2.5e-37 159.5 128 64.8
CAN.G1909.13 Capsicum annuum HOM05D000021 ORTHO05D000010 7.2e-37 157.9 128 64.1
Nitab4.5_0004612g0060 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.2e-34 150.6 126 61.9
CAN.G875.6 Capsicum annuum HOM05D000021 ORTHO05D000010 4.8e-33 145.2 128 58.6
Nitab4.5_0001180g0230 Nicotiana tabacum HOM05D000021 ORTHO05D000010 8.3e-33 144.4 128 60.2
Solyc03g098400.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.7e-25 120.2 128 50.0
CAN.G1909.16 Capsicum annuum HOM05D000021 ORTHO05D000010 2.8e-25 119.4 128 50.8
Sopen03g029140 Solanum pennellii HOM05D000021 ORTHO05D000010 2.0e-23 113.2 128 48.4
CAN.G1635.24 Capsicum annuum HOM05D000021 ORTHO05D000010 4.5e-23 112.1 128 47.7
PGSC0003DMG400010183 Solanum tuberosum HOM05D000021 ORTHO05D000010 8.6e-22 107.8 128 47.7
Solyc09g064980.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.4e-19 100.5 73 67.1
CAN.G1631.1 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-19 100.1 128 46.1
Solyc03g019980.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.0e-19 99.0 115 47.8
Sopen03g029640 Solanum pennellii HOM05D000021 ORTHO05D000010 5.2e-19 98.6 115 47.8
CAN.G1909.12 Capsicum annuum HOM05D000021 ORTHO05D000010 8.9e-19 97.8 122 45.1
PGSC0003DMG400015283 Solanum tuberosum HOM05D000021 ORTHO05D000010 3.7e-17 92.4 115 45.2
Solyc03g098360.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 3.5e-15 85.9 73 57.5
Cc01_g14110 Coffea canephora HOM05D000021 ORTHO05D000010 6.6e-14 81.6 122 39.3
Ciclev10013349m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.9e-13 80.1 124 38.7
Nitab4.5_0004612g0080 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.9e-13 80.1 131 39.7
CSS0011694 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.6e-13 78.6 122 39.3
FAN14G2884 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.3e-13 78.2 122 39.3
CAN.G1631.4 Capsicum annuum HOM05D000021 ORTHO05D000010 1.2e-12 77.4 114 41.2
Nn2g11444 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.2e-12 77.4 122 37.7
Peaxi162Scf00540g00523 Petunia axillaris HOM05D000021 ORTHO05D000010 3.6e-12 75.9 122 38.5
MD04G1157600 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-11 74.3 127 36.2
Nn8g39587 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.4e-11 73.9 122 37.7
Nitab4.5_0008290g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.8e-11 73.6 126 38.1
CAN.G843.22 Capsicum annuum HOM05D000021 ORTHO05D000010 2.3e-11 73.2 128 37.5
Nn2g13677 Nelumbo nucifera HOM05D000021 ORTHO05D000010 3.1e-11 72.8 123 36.6
Ciclev10003965m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.0e-11 72.4 148 37.2
MD04G1150000 Malus domestica HOM05D000021 ORTHO05D000010 5.2e-11 72.0 123 40.7
Nitab4.5_0000010g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.2e-11 72.0 122 38.5
Ciclev10000345m.g Citrus clementina HOM05D000021 ORTHO05D000010 6.8e-11 71.6 122 38.5
MD07G1218000 Malus domestica HOM05D000021 ORTHO05D000010 6.8e-11 71.6 123 36.6
FAN06G2723 Fragaria x ananassa HOM05D000021 ORTHO05D000010 8.9e-11 71.2 135 36.3
MD04G1159000 Malus domestica HOM05D000021 ORTHO05D000010 8.9e-11 71.2 82 50.0
Sopen06g033300 Solanum pennellii HOM05D000021 ORTHO05D000010 8.9e-11 71.2 122 38.5
Peaxi162Scf00540g00520 Petunia axillaris HOM05D000021 ORTHO05D000010 1.2e-10 70.9 122 36.9
Solyc06g076910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 1.2e-10 70.9 122 38.5
Manes.07G070830 Manihot esculenta HOM05D000021 ORTHO05D000010 2.0e-10 70.1 143 32.9
CAN.G394.122 Capsicum annuum HOM05D000021 ORTHO05D000010 2.6e-10 69.7 122 37.7
MD07G1308700 Malus domestica HOM05D000021 ORTHO05D000010 2.6e-10 69.7 114 39.5
TWI74G1203 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.6e-10 69.7 122 38.5
Ciclev10033293m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.4e-10 69.3 111 36.9
Dinv22125 Davidia involucrata HOM05D003883 ORTHO05D004605 3.4e-10 69.3 118 35.6
MD01G1151900 Malus domestica HOM05D000021 ORTHO05D000010 3.4e-10 69.3 120 36.7
Duzib093G0048 Durio zibethinus HOM05D000021 ORTHO05D000010 4.4e-10 68.9 134 35.1
vmacro02990 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.4e-10 68.9 122 38.5
Ciclev10013557m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.8e-10 68.6 109 37.6
Ciclev10013847m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.8e-10 68.6 109 37.6
BcaB01g00947 Brassica carinata HOM05D000021 ORTHO05D000010 7.5e-10 68.2 107 39.3
FAN10G0263 Fragaria x ananassa HOM05D002506 ORTHO05D000010 7.5e-10 68.2 119 36.1
FAN10G4007 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.5e-10 68.2 119 36.1
Ciclev10013853m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.3e-09 67.4 109 35.8
Haze_10842 Corylus avellana HOM05D000021 ORTHO05D000010 1.3e-09 67.4 120 37.5
Medtr1g029940 Medicago truncatula HOM05D000021 ORTHO05D000010 1.3e-09 67.4 119 35.3
Manes.07G016800 Manihot esculenta HOM05D000021 ORTHO05D000010 2.2e-09 66.6 122 35.2
TAR633G2674 Trochodendron aralioides HOM05D000021 ORTHO05D000010 2.2e-09 66.6 81 46.9
MBI14_g39025_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.9e-09 66.2 83 42.2
Nitab4.5_0011052g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.9e-09 66.2 122 36.1
Oeu001613.1 Olea europaea HOM05D000021 ORTHO05D000010 2.9e-09 66.2 90 42.2
vmacro22481 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.9e-09 66.2 122 35.2
arahy.Tifrunner.gnm1.ann1.DC71XN Arachis hypogaea HOM05D000021 ORTHO05D000010 3.7e-09 65.9 82 40.2
MD01G1151200 Malus domestica HOM05D000021 ORTHO05D000010 3.7e-09 65.9 120 35.0
PGSC0003DMG400030443 Solanum tuberosum HOM05D000021 ORTHO05D000010 3.7e-09 65.9 122 36.9
CSS0007625 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.9e-09 65.5 81 40.7
Dinv31021 Davidia involucrata HOM05D000021 ORTHO05D000010 6.4e-09 65.1 123 36.6
Dinv31081 Davidia involucrata HOM05D000021 ORTHO05D000010 6.4e-09 65.1 123 36.6
FAN06G4571 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.4e-09 65.1 122 34.4
arahy.Tifrunner.gnm1.ann1.J6FSGL Arachis hypogaea HOM05D000021 ORTHO05D000010 8.3e-09 64.7 120 34.2
Lj3P711T17 Lonicera japonica HOM05D000021 ORTHO05D000010 8.3e-09 64.7 111 36.9
Thecc.10G021400 Theobroma cacao HOM05D000021 ORTHO05D000010 8.3e-09 64.7 81 43.2
Cc00_g22380 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-08 64.3 122 35.2
MD04G1159100 Malus domestica HOM05D000021 ORTHO05D000010 1.9e-08 63.5 111 36.0
PGSC0003DMG402005482 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.9e-08 63.5 110 38.2
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 3.2e-08 62.8 118 35.6
CSS0038316 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.1e-08 62.4 119 38.7
vmacro08142 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.1e-08 62.4 145 32.4
Aa31LG4G14490 Aethionema arabicum HOM05D000021 ORTHO05D000010 5.4e-08 62.0 135 33.3
Ciclev10004039m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-08 62.0 118 34.7
FAN09G3039 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.4e-08 62.0 111 35.1
Peaxi162Scf00171g00348 Petunia axillaris HOM05D000173 ORTHO05D000010 5.4e-08 62.0 81 42.0
ECA247G2412 Erigeron canadensis HOM05D000021 ORTHO05D000010 7.0e-08 61.6 96 39.6
TAR633G1271 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.0e-08 61.6 118 37.3
Lsat_1_v5_gn_7_36640 Lactuca sativa HOM05D000021 ORTHO05D000010 9.2e-08 61.2 131 31.3
TAR633G1698 Trochodendron aralioides HOM05D000021 ORTHO05D000010 9.2e-08 61.2 118 37.3
MD05G1075900 Malus domestica HOM05D000021 ORTHO05D000010 1.2e-07 60.8 108 38.9
Sed0005843 Sechium edule HOM05D000021 ORTHO05D000010 1.2e-07 60.8 77 44.2
Ciclev10030604m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.6e-07 60.5 122 33.6
Eucgr.F02272 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.6e-07 60.5 158 31.0
TAR594G0001 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.6e-07 60.5 93 38.7
PSO013G0212 Papaver somniferum HOM05D000021 ORTHO05D000010 2.0e-07 60.1 125 32.8
QL05p084691 Quercus lobata HOM05D000021 ORTHO05D000010 2.0e-07 60.1 107 33.6
RcHm_v2.0_Chr1g0336031 Rosa chinensis HOM05D000021 ORTHO05D000010 2.0e-07 60.1 121 33.1
CSS0025786 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.7e-07 59.7 88 36.4
CiPaw.01G038600 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.7e-07 59.7 125 32.8
ECA236G0866 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.7e-07 59.7 144 31.9
Thhalv10011081m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 2.7e-07 59.7 124 32.3
MBI14_g29545_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.7e-07 59.7 73 42.5
MBI14_g38384_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.7e-07 59.7 114 35.1
MD04G1157800 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-07 59.7 108 37.0
Manes.18G124300 Manihot esculenta HOM05D000021 ORTHO05D000010 2.7e-07 59.7 118 33.9
CSS0021192 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.5e-07 59.3 89 36.0
CSS0042522 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.5e-07 59.3 123 32.5
ECA238G3401 Erigeron canadensis HOM05D000021 ORTHO05D000010 3.5e-07 59.3 110 32.7
Oeu001631.1 Olea europaea HOM05D000021 ORTHO05D000010 3.5e-07 59.3 122 35.2
Ciclev10013307m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.6e-07 58.9 109 33.0
Ciclev10013815m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.6e-07 58.9 109 33.0
Gohir.A01G049266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.6e-07 58.9 142 33.8
MBI18_g04909_MAGBIO Magnolia biondii HOM05D004661 ORTHO05D016624 4.6e-07 58.9 66 48.5
MD04G1110500 Malus domestica HOM05D000021 ORTHO05D000010 4.6e-07 58.9 123 35.0
Sabra11G0082900 Salix brachista HOM05D000021 ORTHO05D000010 4.6e-07 58.9 118 33.1
Ca_25061_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 6.0e-07 58.5 101 39.6
Ciclev10003289m.g Citrus clementina HOM05D000021 ORTHO05D000010 7.8e-07 58.2 122 31.1
FvH4_7g24151 Fragaria vesca HOM05D000021 ORTHO05D000010 7.8e-07 58.2 110 33.6
FAN01G1891 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.8e-07 58.2 120 32.5
Lj8P554T3 Lonicera japonica HOM05D000021 ORTHO05D000010 7.8e-07 58.2 122 35.2
Lj2g0024537 Lotus japonicus HOM05D000021 ORTHO05D000010 7.8e-07 58.2 119 34.5
CSS0019114 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.0e-06 57.8 104 38.5
FAN03G0659 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.0e-06 57.8 118 31.4
FAN03G3062 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.0e-06 57.8 118 31.4
FAN06G1786 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.0e-06 57.8 110 36.4
FAN10G3400 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.0e-06 57.8 110 33.6
MD11G1106200 Malus domestica HOM05D000021 ORTHO05D000010 1.0e-06 57.8 122 32.0
Medtr6g036890 Medicago truncatula HOM05D000021 ORTHO05D000010 1.0e-06 57.8 119 37.0
vmacro19753 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.0e-06 57.8 122 32.0
ClCG10G022030 Citrullus lanatus HOM05D000021 ORTHO05D000010 1.3e-06 57.4 84 44.0
FAN09G4760 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.3e-06 57.4 97 37.1
MBI14_g44931_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 1.3e-06 57.4 93 37.6
MD02G1224600 Malus domestica HOM05D000021 ORTHO05D000010 1.3e-06 57.4 122 33.6
Eucgr.L00221 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.7e-06 57.0 81 38.3
TAR473G0002 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.7e-06 57.0 163 29.4
vmacro20126 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.7e-06 57.0 89 39.3
CSS0029676 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.3e-06 56.6 123 33.3
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.3e-06 56.6 100 38.0
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 2.3e-06 56.6 100 38.0
MBI14_g28260_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 2.3e-06 56.6 157 30.6
Psat1g119560 Pisum sativum HOM05D000021 ORTHO05D000010 2.3e-06 56.6 108 34.3
CARHR155750 Cardamine hirsuta HOM05D000021 ORTHO05D000010 3.0e-06 56.2 68 44.1
FAN10G1697 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.0e-06 56.2 92 33.7
FAN10G3713 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.0e-06 56.2 92 33.7
Lsat_1_v5_gn_2_121160 Lactuca sativa HOM05D000021 ORTHO05D000010 3.0e-06 56.2 113 29.2
Nn1g08503 Nelumbo nucifera HOM05D000021 ORTHO05D000010 3.0e-06 56.2 113 32.7
Potri.006G099100 Populus trichocarpa HOM05D000021 ORTHO05D000010 3.0e-06 56.2 122 34.4
CSS0012332 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.9e-06 55.8 123 32.5
Gohir.A05G089300 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.9e-06 55.8 109 34.9
Aa31LG4G16030 Aethionema arabicum HOM05D000021 ORTHO05D000010 5.0e-06 55.5 122 30.3
MBI19_g39211_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 5.0e-06 55.5 74 40.5
Nitab4.5_0002577g0060 Nicotiana tabacum HOM05D000021 ORTHO05D000010 6.6e-06 55.1 126 31.0
MBI14_g25728_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 8.6e-06 54.7 77 41.6
MD00G1048100 Malus domestica HOM05D000021 ORTHO05D000010 8.6e-06 54.7 119 31.1
QL05p004684 Quercus lobata HOM05D000021 ORTHO05D000010 8.6e-06 54.7 119 31.9
vmacro20125 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 8.6e-06 54.7 89 37.1


User provided reference genes

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