Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 0.0e+00 1367.8 714 100.0
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 0.0e+00 1269.6 714 93.8
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 0.0e+00 1147.5 737 85.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.2e-273 944.1 701 76.7
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-252 876.7 761 67.7
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.1e-248 862.1 764 67.4
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.9e-174 616.3 752 57.2
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.0e-158 563.1 741 52.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 2.9e-153 546.6 871 44.5
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.3e-150 537.7 783 49.6
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.3e-142 510.4 712 50.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.7e-140 502.7 744 49.6
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 6.2e-140 502.3 733 47.6
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 7.6e-138 495.4 747 47.9
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.4e-137 492.3 748 49.3
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.9e-136 490.7 754 46.9
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.0e-134 485.0 707 48.2
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.5e-133 480.3 765 47.5
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.5e-133 480.3 775 45.9
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 5.6e-133 479.2 750 46.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.6e-132 477.6 757 46.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.8e-131 474.2 712 48.2
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.5e-130 471.1 817 43.9
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.4e-130 469.9 710 47.2
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 7.6e-130 468.8 786 43.9
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 9.9e-130 468.4 769 45.1
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-129 468.0 738 44.7
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.7e-129 467.6 795 44.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.9e-129 466.8 779 45.3
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 4.9e-129 466.1 758 45.9
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 8.4e-129 465.3 788 46.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.4e-128 464.5 740 45.3
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 2.1e-127 460.7 728 47.0
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 7.9e-127 458.8 827 43.3
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.0e-126 456.8 786 46.1
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.1e-126 456.1 800 42.4
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.5e-125 454.5 784 43.6
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 4.8e-124 449.5 723 44.8
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 8.1e-124 448.7 760 45.8
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 2.4e-123 447.2 782 43.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.0e-123 446.4 780 45.5
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 9.0e-123 445.3 752 45.7
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 9.0e-123 445.3 759 45.5
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.6e-122 443.7 749 46.2
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 4.5e-122 443.0 761 44.8
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.6e-122 442.2 785 45.6
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.7e-121 441.0 770 43.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.9e-121 440.3 733 44.2
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.8e-118 431.0 813 41.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 8.7e-118 428.7 757 44.8
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.1e-117 428.3 779 42.9
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.5e-117 427.9 739 44.8
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.9e-117 427.6 782 45.1
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.3e-117 426.4 668 45.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.6e-116 424.5 752 44.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 6.9e-115 419.1 706 43.2
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.5e-114 417.9 733 43.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.4e-114 416.8 747 42.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 4.9e-113 412.9 741 42.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.9e-112 411.0 766 43.2
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 7.1e-112 409.1 774 42.2
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.1e-111 407.5 811 40.1
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 3.5e-111 406.8 774 44.7
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.1e-110 402.9 767 42.5
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 8.7e-110 402.1 733 42.6
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-108 398.3 766 42.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 2.1e-108 397.5 703 42.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.8e-108 397.1 779 43.6
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.2e-106 391.7 777 41.4
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 5.8e-106 389.4 620 46.0
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.9e-104 384.4 747 42.0
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.1e-103 380.9 739 41.8
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.9e-102 376.7 747 40.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 8.7e-102 375.6 736 43.1
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.9e-101 374.4 719 42.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.3e-100 371.7 734 41.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.4e-99 367.5 721 41.6
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.1e-99 366.7 764 39.8
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 9.0e-99 365.5 716 44.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.6e-98 364.0 768 41.3
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.6e-98 364.0 688 41.3
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 3.8e-97 360.1 821 39.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.5e-97 359.0 677 43.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.0e-94 352.1 729 41.6
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.3e-94 350.9 794 38.8
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 3.9e-94 350.1 773 39.8
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.9e-94 350.1 760 39.5
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.1e-94 349.7 776 38.8
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.1e-93 348.6 752 40.0
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.5e-93 348.2 728 42.4
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.3e-92 345.1 643 43.9
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-92 345.1 692 40.3
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.7e-92 344.7 767 40.2
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.6e-90 337.4 672 41.1
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 5.0e-89 333.2 716 40.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 8.5e-89 332.4 744 41.1
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.1e-88 332.0 684 40.6
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.4e-88 331.6 768 37.1
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 5.5e-88 329.7 714 39.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.2e-87 328.6 697 39.5
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 6.7e-86 322.8 747 39.1
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 8.8e-86 322.4 736 39.3
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.1e-85 322.0 750 39.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-85 322.0 823 36.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-84 317.8 782 37.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.8e-84 317.4 703 39.0
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.1e-83 315.5 794 35.8
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 4.5e-82 310.1 829 35.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 5.5e-80 303.1 686 38.3
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 3.6e-79 300.4 697 37.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 6.3e-76 289.7 779 36.3
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 7.0e-75 286.2 761 35.9
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 9.1e-75 285.8 688 36.2
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.9e-73 280.8 770 36.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.5e-72 277.7 790 34.2
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 6.8e-70 269.6 718 35.1
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.5e-69 268.5 685 36.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.0e-69 268.1 759 34.3
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.8e-69 265.8 731 35.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.0e-62 244.2 715 35.4
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.4e-59 233.4 601 35.4
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.3e-57 228.0 720 33.6
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.1e-56 225.7 254 55.5
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.6e-55 220.7 697 33.4
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-54 217.2 772 32.3
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-53 214.9 697 33.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-51 209.1 793 31.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.8e-51 208.4 699 31.9
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 5.4e-51 206.8 651 32.7
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 7.0e-51 206.5 645 32.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.2e-50 205.7 754 31.8
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.2e-50 205.7 754 31.8
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 3.5e-50 204.1 651 32.4
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.0e-49 202.6 651 32.4
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.3e-49 202.2 752 31.0
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 3.0e-49 201.1 758 31.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.9e-48 198.4 683 32.1
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.9e-48 198.4 613 33.6
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.2e-47 195.7 875 31.3
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 4.7e-47 193.7 863 31.2
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 6.2e-47 193.4 745 30.5
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.8e-45 186.8 778 29.3
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-43 182.6 594 34.5
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.4e-43 181.4 710 31.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.7e-42 177.9 700 30.9
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.0e-41 174.5 878 29.7
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 5.6e-40 170.2 217 51.2
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.1e-39 168.3 360 37.8
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-38 165.6 471 36.5
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.3e-38 164.9 329 41.0
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.3e-36 159.1 265 43.4
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.9e-36 157.9 452 34.1
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 4.6e-34 150.6 259 41.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 6.0e-34 150.2 485 32.6
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 7.8e-34 149.8 285 43.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.3e-32 144.4 448 33.5
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 7.3e-32 143.3 130 59.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 7.3e-32 143.3 192 47.9
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.3e-30 138.3 153 55.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 9.2e-27 126.3 164 50.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.9e-24 118.6 102 69.6
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.1e-22 112.8 114 56.1
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.0e-22 110.9 118 66.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.0e-17 94.7 675 26.5
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.6e-15 87.8 473 26.6
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.5e-13 82.4 264 31.4
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.5e-13 80.9 184 37.0
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-09 69.3 70 60.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.3e-09 69.3 51 72.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.5e-08 65.1 302 27.5
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.3e-08 64.3 312 27.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.4e-08 63.5 307 27.0
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.1e-07 62.0 601 23.6
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 8.1e-07 60.1 298 27.2
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.9e-06 57.0 324 25.9


User provided reference genes

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