Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.4e-40 170.2 92 100.0
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.6e-34 149.4 99 85.9
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 3.8e-25 119.0 100 70.0
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 3.2e-24 115.9 66 90.9
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 4.0e-22 109.0 103 63.1
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 2.8e-20 102.8 95 60.0
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.4e-19 99.8 93 61.3
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 3.1e-19 99.4 90 60.0
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 1.0e-17 94.4 99 53.5
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 5.0e-17 92.0 61 77.0
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 5.0e-17 92.0 104 55.8
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 8.5e-17 91.3 92 55.4
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.5e-16 90.5 97 51.5
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-15 86.3 64 73.4
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.6e-15 85.9 50 82.0
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 4.7e-15 85.5 100 51.0
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 8.0e-15 84.7 101 50.5
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 8.0e-15 84.7 50 80.0
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.0e-14 82.8 101 52.5
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 1.2e-13 80.9 48 77.1
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.6e-13 79.7 97 49.5
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 4.4e-13 79.0 101 45.5
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 2.2e-12 76.6 100 44.0
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.2e-12 76.6 87 50.6
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 7.0e-11 71.6 87 47.1
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 9.1e-11 71.2 64 56.2
Haze_22895 Corylus avellana HOM05D000135 ORTHO05D000816 9.1e-11 71.2 87 48.3
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.2e-10 70.9 92 45.7
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 2.0e-10 70.1 93 45.2
Cfa014171 Carpinus fangiana HOM05D000135 ORTHO05D000816 3.5e-10 69.3 91 46.2
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 3.5e-10 69.3 44 70.5
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.5e-10 69.3 82 50.0
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.5e-10 69.3 48 64.6
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.5e-10 69.3 48 64.6
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 4.5e-10 68.9 82 50.0
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.5e-10 68.9 82 50.0
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.5e-10 68.9 82 50.0
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.7e-10 68.2 50 62.0
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 7.7e-10 68.2 82 43.9
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 7.7e-10 68.2 93 46.2
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 7.7e-10 68.2 48 64.6
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 1.0e-09 67.8 47 63.8
Lj2C97T5 Lonicera japonica HOM05D000135 ORTHO05D000816 1.3e-09 67.4 91 46.2
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 1.3e-09 67.4 85 44.7
EL10Ac2g03275 Beta vulgaris HOM05D000135 ORTHO05D000816 2.3e-09 66.6 52 63.5
DCAR_009849 Daucus carota HOM05D000135 ORTHO05D000816 2.3e-09 66.6 50 62.0
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 2.3e-09 66.6 93 46.2
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 2.9e-09 66.2 89 42.7
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.9e-09 66.2 45 64.4
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 3.8e-09 65.9 48 60.4
Thecc.08G097200 Theobroma cacao HOM05D000135 ORTHO05D000816 3.8e-09 65.9 91 45.1
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 6.5e-09 65.1 42 69.0
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 6.5e-09 65.1 48 58.3
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 6.5e-09 65.1 48 58.3
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 6.5e-09 65.1 50 62.0
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 6.5e-09 65.1 79 46.8
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 6.5e-09 65.1 89 40.4
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 8.6e-09 64.7 93 43.0
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 8.6e-09 64.7 93 43.0
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 8.6e-09 64.7 48 58.3
CiPaw.08G079300 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.1e-08 64.3 92 44.6
PSO170G5965 Papaver somniferum HOM05D031213 ORTHO05D000816 1.1e-08 64.3 79 46.8
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.5e-08 63.9 48 58.3
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 1.5e-08 63.9 50 56.0
Lj2C97T4 Lonicera japonica HOM05D000135 ORTHO05D000816 2.5e-08 63.2 91 41.8
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 2.5e-08 63.2 48 60.4
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 2.5e-08 63.2 44 65.9
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 3.2e-08 62.8 42 64.3
PSO017G0388 Papaver somniferum HOM05D031213 ORTHO05D000816 3.2e-08 62.8 89 42.7
PSO017G5575 Papaver somniferum HOM05D031213 ORTHO05D000816 3.2e-08 62.8 86 43.0
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 3.2e-08 62.8 46 56.5
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 4.2e-08 62.4 44 63.6
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 4.2e-08 62.4 44 63.6
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 5.5e-08 62.0 49 57.1
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 5.5e-08 62.0 44 61.4
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 5.5e-08 62.0 48 60.4
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 7.2e-08 61.6 48 54.2
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 7.2e-08 61.6 40 65.0
Aqoxy5G00935 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 9.5e-08 61.2 99 40.4
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 9.5e-08 61.2 44 63.6
CiPaw.05G177300 Carya illinoinensis HOM05D000135 ORTHO05D000816 9.5e-08 61.2 85 44.7
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 9.5e-08 61.2 50 50.0
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 9.5e-08 61.2 44 59.1
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 9.5e-08 61.2 48 60.4
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 9.5e-08 61.2 42 61.9
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.2e-07 60.8 48 56.2
Lsat_1_v5_gn_8_25621 Lactuca sativa HOM05D000135 ORTHO05D000816 1.2e-07 60.8 51 58.8
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 1.2e-07 60.8 50 54.0
PGR031G1432 Punica granatum HOM05D000135 ORTHO05D000816 1.2e-07 60.8 91 44.0
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 1.6e-07 60.5 86 43.0
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.6e-07 60.5 46 54.3
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.6e-07 60.5 44 61.4
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 1.6e-07 60.5 42 69.0
Oeu000733.1 Olea europaea HOM05D000135 ORTHO05D000816 1.6e-07 60.5 87 40.2
Sc09g0007590 Simmondsia chinensis HOM05D000135 ORTHO05D000816 1.6e-07 60.5 57 56.1
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 2.1e-07 60.1 44 54.5
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 2.1e-07 60.1 45 51.1
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 2.1e-07 60.1 48 56.2
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 2.1e-07 60.1 49 57.1
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.1e-07 60.1 46 54.3
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.8e-07 59.7 46 58.7
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 2.8e-07 59.7 42 61.9
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.8e-07 59.7 42 61.9
PSO017G1231 Papaver somniferum HOM05D000135 ORTHO05D000816 2.8e-07 59.7 79 44.3
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.8e-07 59.7 48 54.2
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.8e-07 59.7 48 54.2
TAR381G0615 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.8e-07 59.7 42 59.5
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 3.6e-07 59.3 44 56.8
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 3.6e-07 59.3 92 44.6
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 3.6e-07 59.3 46 58.7
Duzib093G1260 Durio zibethinus HOM05D000135 ORTHO05D000816 4.7e-07 58.9 86 36.0
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 4.7e-07 58.9 44 63.6
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 4.7e-07 58.9 44 56.8
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 4.7e-07 58.9 50 52.0
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 4.7e-07 58.9 44 56.8
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 4.7e-07 58.9 46 54.3
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 6.1e-07 58.5 45 60.0
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 6.1e-07 58.5 48 52.1
GSVIVG01010378001 Vitis vinifera HOM05D000135 ORTHO05D000816 6.1e-07 58.5 40 65.0
CiPaw.05G177400 Carya illinoinensis HOM05D000135 ORTHO05D000816 8.0e-07 58.2 76 42.1
CiPaw.06G007300 Carya illinoinensis HOM05D000135 ORTHO05D000816 8.0e-07 58.2 49 53.1
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 8.0e-07 58.2 48 56.2
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 8.0e-07 58.2 48 56.2
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 8.0e-07 58.2 40 62.5
Prupe.5G152700 Prunus persica HOM05D000135 ORTHO05D000816 8.0e-07 58.2 48 56.2
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.0e-07 58.2 46 56.5
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.0e-07 58.2 46 56.5
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 1.0e-06 57.8 42 61.9
Glyma.05G047100 Glycine max HOM05D000135 ORTHO05D000816 1.0e-06 57.8 43 55.8
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 1.0e-06 57.8 42 61.9
RcHm_v2.0_Chr7g0190421 Rosa chinensis HOM05D000135 ORTHO05D000816 1.0e-06 57.8 46 56.5
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 1.0e-06 57.8 43 51.2
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 1.0e-06 57.8 43 51.2
BraA09t37576Z Brassica rapa HOM05D000135 ORTHO05D000816 1.4e-06 57.4 92 41.3
Lj4g0011466 Lotus japonicus HOM05D000135 ORTHO05D000816 1.4e-06 57.4 40 62.5
BcaC04g21998 Brassica carinata HOM05D000135 ORTHO05D000816 1.8e-06 57.0 92 41.3
A09p19650 Brassica napus HOM05D000135 ORTHO05D000816 1.8e-06 57.0 92 41.3
C09p25010 Brassica napus HOM05D000135 ORTHO05D000816 1.8e-06 57.0 92 41.3
BolC9t55394H Brassica oleracea HOM05D000135 ORTHO05D000816 1.8e-06 57.0 92 41.3
Cpa.g.sc36.92 Carica papaya HOM05D000135 ORTHO05D000816 1.8e-06 57.0 50 60.0
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 1.8e-06 57.0 48 56.2
Eucgr.B00125 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.8e-06 57.0 44 61.4
Lalb_Chr08g0237071 Lupinus albus HOM05D000135 ORTHO05D000816 1.8e-06 57.0 42 57.1
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 2.3e-06 56.6 45 57.8
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 2.3e-06 56.6 46 54.3
Glyma.17G128900 Glycine max HOM05D000135 ORTHO05D000816 2.3e-06 56.6 42 57.1
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 2.3e-06 56.6 42 59.5
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-06 56.2 42 59.5
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 3.0e-06 56.2 44 56.8
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 3.0e-06 56.2 44 54.5
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.0e-06 56.2 40 62.5
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 4.0e-06 55.8 48 52.1
BcaB07g31080 Brassica carinata HOM05D000135 ORTHO05D000816 4.0e-06 55.8 94 39.4
AUR62037653 Chenopodium quinoa HOM05D000135 ORTHO05D000816 4.0e-06 55.8 65 53.8
Nn3g16507 Nelumbo nucifera HOM05D000135 ORTHO05D000816 4.0e-06 55.8 43 53.5
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.0e-06 55.8 46 54.3
Eucgr.B00123 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.2e-06 55.5 44 61.4
Eucgr.B00124 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.2e-06 55.5 44 59.1
FAN08G0825 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.2e-06 55.5 46 54.3
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 5.2e-06 55.5 46 56.5
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 5.2e-06 55.5 42 57.1
Sed0012230 Sechium edule HOM05D000135 ORTHO05D000816 5.2e-06 55.5 47 53.2
unitig_748.g7057 Utricularia gibba HOM05D000135 ORTHO05D000816 5.2e-06 55.5 50 52.0
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 5.2e-06 55.5 43 58.1
ClCG06G017800 Citrullus lanatus HOM05D000135 ORTHO05D000816 6.8e-06 55.1 48 56.2
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 6.8e-06 55.1 46 52.2
FvH4_5g08060 Fragaria vesca HOM05D000135 ORTHO05D000816 6.8e-06 55.1 46 54.3
FAN04G2593 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.8e-06 55.1 46 54.3
FAN13G0461 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.8e-06 55.1 46 54.3
FAN18G3513 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.8e-06 55.1 46 54.3
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 6.8e-06 55.1 55 49.1
Lj4g0025643 Lotus japonicus HOM05D000135 ORTHO05D000816 8.8e-06 54.7 39 59.0
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 8.8e-06 54.7 44 54.5
QL10p004084 Quercus lobata HOM05D000135 ORTHO05D000816 8.8e-06 54.7 43 58.1
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 8.8e-06 54.7 40 60.0


User provided reference genes

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