Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014740.1 Solanum lycopersicum HOM05D002182 ORTHO05D004671 1.7e-142 509.2 243 100.0
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 1.0e-73 280.8 163 83.4
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 3.9e-70 268.9 163 80.4
Nitab4.5_0001277g0040 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.3e-69 265.4 129 94.6
Nitab4.5_0000120g0160 Nicotiana tabacum HOM05D002182 ORTHO05D004671 1.3e-68 263.8 128 94.5
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 3.1e-67 259.2 162 75.3
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 8.5e-65 251.1 163 72.4
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 1.4e-64 250.4 128 87.5
Actinidia20029 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.9e-64 250.0 163 72.4
Peaxi162Scf00151g00069 Petunia axillaris HOM05D002182 ORTHO05D004671 2.5e-64 249.6 145 82.1
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 1.2e-63 247.3 162 73.5
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.2e-63 247.3 209 58.9
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 1.2e-63 247.3 163 73.0
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 2.1e-63 246.5 162 72.8
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 2.7e-63 246.1 181 65.7
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 4.6e-63 245.4 164 71.3
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 4.6e-63 245.4 129 83.7
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 4.6e-63 245.4 162 72.2
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 7.9e-63 244.6 162 71.0
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 1.0e-62 244.2 127 87.4
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 1.4e-62 243.8 162 72.2
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.8e-62 243.4 171 69.0
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 3.9e-62 242.3 162 71.0
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 3.9e-62 242.3 129 85.3
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 5.1e-62 241.9 127 86.6
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 5.1e-62 241.9 129 83.7
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 5.1e-62 241.9 162 71.0
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 5.1e-62 241.9 162 69.1
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 6.7e-62 241.5 162 69.8
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 8.8e-62 241.1 168 69.6
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 8.8e-62 241.1 171 67.8
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 1.5e-61 240.4 162 70.4
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 2.0e-61 240.0 162 67.9
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.0e-61 240.0 129 82.2
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 2.5e-61 239.6 129 85.3
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 3.3e-61 239.2 162 69.8
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 7.4e-61 238.0 129 79.8
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 7.4e-61 238.0 162 68.5
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 7.4e-61 238.0 129 82.2
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 7.4e-61 238.0 162 69.8
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 9.7e-61 237.7 164 71.3
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 9.7e-61 237.7 127 85.0
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.3e-60 237.3 162 70.4
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.3e-60 237.3 162 69.8
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 1.7e-60 236.9 162 71.0
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 2.2e-60 236.5 162 69.1
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.7e-60 235.7 162 71.0
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.7e-60 235.7 162 69.1
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.7e-60 235.7 162 69.1
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 3.7e-60 235.7 162 70.4
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 4.8e-60 235.3 129 82.9
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 4.8e-60 235.3 162 67.9
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 6.3e-60 235.0 162 69.1
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 1.1e-59 234.2 162 69.8
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 4.1e-59 232.3 129 82.9
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 9.1e-59 231.1 163 65.0
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.2e-58 230.7 162 67.9
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 1.5e-58 230.3 167 66.5
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 2.0e-58 229.9 162 67.9
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.6e-58 229.6 163 66.3
Cpa.g.sc37.4 Carica papaya HOM05D002182 ORTHO05D004671 3.4e-58 229.2 128 82.0
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 4.5e-58 228.8 162 67.9
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 4.5e-58 228.8 163 65.0
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 4.5e-58 228.8 162 66.0
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 5.9e-58 228.4 167 65.9
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 5.9e-58 228.4 162 67.9
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 1.0e-57 227.6 163 68.1
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.3e-57 227.3 129 78.3
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 1.3e-57 227.3 167 65.9
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.3e-57 227.3 167 65.9
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 1.3e-57 227.3 167 65.9
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 1.3e-57 227.3 167 65.9
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.3e-57 227.3 167 65.9
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 1.7e-57 226.9 167 65.3
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 1.7e-57 226.9 167 65.3
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.7e-57 226.9 162 66.0
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 2.9e-57 226.1 162 66.7
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 3.8e-57 225.7 167 65.3
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 5.0e-57 225.3 162 66.7
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 8.5e-57 224.6 167 64.7
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 1.1e-56 224.2 167 64.7
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.4e-56 223.8 163 66.9
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 1.4e-56 223.8 163 65.0
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 1.4e-56 223.8 204 57.4
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 1.9e-56 223.4 167 65.3
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.7e-52 210.3 162 63.0
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 2.2e-49 199.9 129 72.1
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.2e-49 199.9 160 58.1
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.2e-49 199.9 163 58.3
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 2.9e-49 199.5 162 57.4
Rhsim10G0124200 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.1e-48 197.6 125 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 9.4e-48 194.5 163 57.1
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 8.0e-47 191.4 104 83.7
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.8e-46 190.3 108 80.6
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 5.7e-45 185.3 138 64.5
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 2.6e-42 176.4 93 86.0
SEGI_15758 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 3.2e-40 169.5 101 73.3
CBR_g74987 Chara braunii HOM05D002182 ORTHO05D004671 2.2e-36 156.8 105 67.6
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 1.0e-30 137.9 120 56.7
Haze_26976 Corylus avellana HOM05D002182 ORTHO05D004671 9.1e-27 124.8 158 43.0
CSS0026830 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.2e-26 124.4 95 61.1
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 1.3e-25 120.9 67 83.6
Medtr5g061930 Medicago truncatula HOM05D002182 ORTHO05D004671 3.3e-24 116.3 140 41.4
Haze_25331 Corylus avellana HOM05D002182 ORTHO05D004671 2.1e-23 113.6 94 57.4
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 1.0e-22 111.3 145 42.1
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 2.3e-22 110.2 141 42.6
CDE09G0651 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 3.0e-22 109.8 67 68.7
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.4e-21 106.3 236 30.1
PSO782G2357 Papaver somniferum HOM05D002182 ORTHO05D004671 4.0e-14 82.8 135 34.1
PSO170G3411 Papaver somniferum HOM05D002182 ORTHO05D004671 5.8e-13 79.0 111 37.8
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 2.9e-12 76.6 183 30.6
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 2.9e-12 76.6 183 30.6
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 3.7e-12 76.3 183 30.6
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 8.3e-12 75.1 183 30.6
Prupe.1G173400 Prunus persica HOM05D002182 ORTHO05D008382 7.0e-11 72.0 183 30.1
EL10Ac3g07419 Beta vulgaris HOM05D002182 ORTHO05D008382 1.6e-10 70.9 183 27.9
Sc19g0007480 Simmondsia chinensis HOM05D002182 ORTHO05D008382 1.6e-10 70.9 183 27.9
RcHm_v2.0_Chr2g0108981 Rosa chinensis HOM05D002182 ORTHO05D008382 6.0e-10 68.9 144 32.6
Carub.0004s1334 Capsella rubella HOM05D002182 ORTHO05D008382 7.8e-10 68.6 183 29.0
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 1.0e-09 68.2 183 29.0
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 1.0e-09 68.2 183 29.5
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 3.0e-09 66.6 183 28.4
Aa31LG5G5010 Aethionema arabicum HOM05D002182 ORTHO05D008382 1.1e-08 64.7 183 27.9
MCO11G923 Micromonas commoda HOM05D002182 ORTHO05D008382 1.9e-08 63.9 151 27.2
Hund19029 Selenicereus undatus HOM05D002182 ORTHO05D008382 5.6e-08 62.4 146 28.1
Manes.01G002901 Manihot esculenta HOM05D002182 ORTHO05D008382 3.1e-06 56.6 118 28.8
SEGI_13382 Sequoiadendron giganteum HOM05D002182 ORTHO05D008382 6.8e-06 55.5 152 26.3


User provided reference genes

Program Settings