Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.6e-74 282.7 151 100.0
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 3.4e-72 275.0 151 98.0
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.9e-72 273.5 151 93.4
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.5e-56 223.0 151 80.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.2e-46 188.3 151 66.9
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 3.9e-44 181.8 120 72.5
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.5e-43 179.9 120 72.5
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 2.5e-43 179.1 122 70.5
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.5e-43 179.1 120 73.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 4.3e-43 178.3 123 69.9
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.7e-43 177.9 120 76.7
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 5.7e-43 177.9 117 76.1
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 7.4e-43 177.6 113 77.9
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 9.6e-43 177.2 120 71.7
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.3e-42 176.8 148 63.5
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 2.1e-42 176.0 114 73.7
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.8e-42 175.6 114 76.3
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.8e-42 175.6 117 76.1
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 2.8e-42 175.6 149 66.4
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 3.7e-42 175.3 112 74.1
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 4.8e-42 174.9 117 74.4
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 6.3e-42 174.5 119 72.3
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.3e-42 174.5 115 71.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.3e-42 174.5 121 72.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 8.2e-42 174.1 125 70.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 8.2e-42 174.1 125 70.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 8.2e-42 174.1 125 70.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 8.2e-42 174.1 121 71.1
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.1e-41 173.7 117 74.4
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.4e-41 173.3 127 70.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 2.4e-41 172.6 126 70.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.4e-41 172.6 149 63.8
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.4e-41 172.6 114 74.6
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 3.1e-41 172.2 125 70.4
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 5.3e-41 171.4 116 72.4
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 5.3e-41 171.4 118 70.3
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.3e-41 171.4 149 63.8
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 9.0e-41 170.6 88 92.0
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.5e-40 169.9 134 65.7
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.6e-40 169.1 120 68.3
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 4.5e-40 168.3 118 69.5
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 4.5e-40 168.3 114 71.9
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 4.5e-40 168.3 115 73.9
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 5.9e-40 167.9 123 69.1
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 5.9e-40 167.9 120 67.5
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 7.6e-40 167.5 148 66.9
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.0e-39 167.2 122 68.0
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.3e-39 166.8 111 75.7
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.3e-39 166.8 110 69.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.7e-39 166.4 118 68.6
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.2e-39 166.0 119 68.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.9e-39 165.6 120 65.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 2.9e-39 165.6 118 66.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.8e-39 165.2 124 69.4
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 5.0e-39 164.9 119 68.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 5.0e-39 164.9 120 65.8
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 8.5e-39 164.1 114 70.2
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 8.5e-39 164.1 119 68.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 8.5e-39 164.1 117 71.8
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.1e-38 163.7 119 67.2
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.4e-38 163.3 114 69.3
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 1.4e-38 163.3 116 65.5
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.5e-38 162.5 86 89.5
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 4.2e-38 161.8 115 70.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 4.2e-38 161.8 118 64.4
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 9.3e-38 160.6 119 67.2
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 1.6e-37 159.8 116 67.2
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 2.1e-37 159.5 119 67.2
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 2.7e-37 159.1 143 60.1
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 2.7e-37 159.1 143 60.1
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.6e-37 158.3 132 62.9
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.6e-37 158.3 132 62.9
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.6e-37 158.3 116 66.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.0e-36 157.1 127 63.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.0e-36 157.1 130 63.1
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.3e-36 156.8 119 64.7
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-36 156.8 126 64.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-36 156.8 131 63.4
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-36 156.4 111 68.5
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 3.0e-36 155.6 113 66.4
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 3.0e-36 155.6 111 69.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.0e-36 155.6 119 67.2
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 6.7e-36 154.5 115 67.0
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 8.7e-36 154.1 115 65.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 8.7e-36 154.1 121 62.0
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.1e-35 153.7 118 66.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.1e-35 153.7 120 66.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.3e-35 152.1 120 64.2
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.3e-35 151.8 118 59.3
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.2e-34 149.4 123 58.5
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.2e-34 149.4 124 63.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 2.8e-34 149.1 125 61.6
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.7e-34 148.7 121 59.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 6.3e-34 147.9 121 60.3
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.1e-33 147.1 117 59.8
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.4e-33 146.0 127 65.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 9.1e-33 144.1 82 85.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.3e-31 140.2 175 47.4
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-31 140.2 154 50.6
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 8.5e-31 137.5 99 62.6
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.2e-30 135.6 117 62.4
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.5e-30 134.8 118 60.2
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 7.2e-30 134.4 119 63.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.6e-29 133.3 83 72.3
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.1e-29 132.9 159 48.4
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.7e-29 132.5 117 61.5
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 6.7e-28 127.9 117 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.0e-27 126.3 122 54.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.6e-27 125.9 109 63.3
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 5.7e-27 124.8 116 58.6
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.7e-26 123.2 115 52.2
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 2.2e-26 122.9 111 60.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 4.8e-26 121.7 115 58.3
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 6.3e-26 121.3 98 61.2
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 8.2e-26 120.9 111 59.5
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.1e-25 120.6 99 56.6
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.4e-25 119.4 68 76.5
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.1e-25 118.6 132 50.0
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.6e-24 115.9 98 56.1
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.6e-24 115.9 113 48.7
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.2e-22 108.6 68 69.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 2.3e-20 102.8 67 67.2
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 6.7e-20 101.3 175 38.3
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 7.0e-17 91.3 82 58.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.0e-12 77.4 51 64.7
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 6.7e-12 74.7 61 50.8
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 3.3e-11 72.4 80 53.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 4.4e-11 72.0 53 58.5
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 5.7e-11 71.6 85 57.6
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 7.0e-09 64.7 49 61.2


User provided reference genes

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