Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 7.5e-312 1072.8 546 100.0
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 8.0e-297 1023.1 526 98.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.0e-288 994.2 543 94.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.6e-265 919.1 527 91.1
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 3.7e-254 881.3 477 93.1
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-242 843.2 530 80.8
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.1e-241 839.0 535 79.6
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 8.1e-241 837.0 533 80.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.2e-238 828.9 508 81.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.8e-238 828.2 526 79.3
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.4e-237 826.2 541 76.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.2e-237 825.1 526 78.9
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.2e-237 825.1 526 78.5
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-237 825.1 528 78.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 4.2e-237 824.7 525 77.7
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.6e-236 821.2 530 78.9
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 7.9e-236 820.5 522 78.9
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.7e-235 819.3 461 86.8
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.3e-235 818.9 538 77.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.0e-235 818.5 475 83.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 6.6e-235 817.4 488 80.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 8.7e-235 817.0 473 83.3
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.5e-234 815.5 521 77.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 7.4e-234 813.9 522 79.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.3e-233 813.1 521 77.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 4.8e-233 811.2 529 77.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.8e-232 809.3 462 84.4
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.4e-232 808.9 529 77.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.4e-232 808.9 461 84.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.1e-232 808.5 524 77.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.0e-232 808.1 517 78.3
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 6.9e-232 807.4 529 78.3
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.9e-232 807.4 524 78.8
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.0e-232 807.0 530 78.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.2e-231 806.6 530 77.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.6e-231 805.4 485 81.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.4e-231 805.1 463 85.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.4e-231 805.1 529 77.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 4.5e-231 804.7 519 78.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.8e-231 804.3 521 78.3
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.9e-231 803.5 529 76.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.7e-230 802.7 515 78.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.2e-230 802.4 534 76.0
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.8e-230 801.6 526 76.8
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 8.4e-230 800.4 525 77.7
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 8.4e-230 800.4 526 77.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-229 800.0 562 72.6
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.9e-229 799.3 463 83.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.4e-229 798.9 518 76.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 5.5e-229 797.7 517 77.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.2e-228 796.6 513 77.2
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.7e-228 795.4 534 75.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.5e-228 795.0 546 75.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 4.6e-228 794.7 480 80.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 6.0e-228 794.3 526 76.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.0e-228 794.3 462 83.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.0e-228 794.3 547 74.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 6.0e-228 794.3 464 82.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.9e-228 793.9 514 77.0
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.0e-227 793.5 562 72.6
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.3e-227 792.3 461 83.1
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.3e-227 792.3 519 76.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.0e-227 792.0 528 74.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.0e-227 792.0 527 74.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.1e-226 790.0 462 81.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.5e-226 789.6 497 77.5
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.9e-226 789.3 540 74.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.3e-226 788.1 516 76.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.6e-226 786.9 518 75.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.3e-225 786.6 528 74.8
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.7e-225 785.0 519 75.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.8e-225 784.6 477 79.5
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 6.2e-225 784.3 461 80.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.1e-224 783.5 512 75.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.1e-224 781.9 550 72.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 5.3e-224 781.2 516 75.2
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-223 780.0 528 74.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.2e-223 780.0 561 72.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.6e-223 778.9 521 74.7
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.6e-223 778.9 521 74.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 3.4e-223 778.5 520 75.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.9e-222 775.4 509 75.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.9e-222 775.4 468 80.3
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-221 773.1 519 74.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-221 772.3 522 74.3
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 5.5e-221 771.2 512 74.6
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.6e-220 769.6 462 79.9
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.6e-220 769.6 449 90.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.7e-220 768.8 522 73.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.7e-220 768.8 526 73.4
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-220 768.5 463 79.9
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 6.0e-220 767.7 516 73.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.3e-219 765.8 525 73.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.9e-219 765.0 462 80.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 8.7e-219 763.8 525 73.7
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.9e-218 762.7 522 73.6
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.3e-218 761.9 564 69.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 8.2e-217 757.3 452 88.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 6.9e-216 754.2 546 70.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.9e-216 754.2 511 73.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.0e-214 750.4 495 73.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.5e-210 735.7 486 75.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.2e-209 732.6 467 74.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 4.1e-208 728.4 515 70.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.2e-206 722.6 527 71.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.1e-205 720.3 406 85.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.6e-204 716.5 467 74.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.4e-203 713.4 451 81.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 5.1e-203 711.4 470 73.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.1e-203 711.4 517 68.7
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.5e-202 709.9 414 81.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.3e-202 708.8 459 76.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.4e-200 702.6 468 73.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 9.1e-200 700.7 465 71.0
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.7e-195 684.5 463 73.2
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.0e-192 674.5 529 68.4
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.5e-189 664.8 520 65.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.1e-188 662.9 373 84.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.0e-187 660.6 786 50.1
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 8.8e-187 657.5 373 84.5
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-184 649.4 462 72.3
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-184 648.7 488 67.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 6.1e-180 634.8 453 67.1
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 5.2e-179 631.7 396 80.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 5.9e-175 618.2 460 69.8
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-174 616.7 487 66.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-171 606.7 488 63.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.8e-163 580.1 355 80.8
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.0e-163 578.9 418 73.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.7e-126 454.9 323 74.6
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-119 433.7 368 64.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 9.6e-117 424.9 238 85.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 6.0e-103 379.0 292 65.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-99 366.7 249 75.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.9e-97 360.1 457 42.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.9e-94 349.7 457 41.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.4e-88 331.3 200 79.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.6e-87 327.8 459 40.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 4.5e-82 309.7 232 68.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.0e-65 255.4 400 41.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 3.0e-62 243.8 131 88.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.8e-60 236.5 204 66.2
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.4e-59 234.2 170 68.2
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 8.9e-54 215.7 196 60.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-52 210.7 165 66.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.4e-45 187.2 123 65.9
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 5.8e-45 186.4 132 65.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-43 181.4 249 43.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.9e-43 181.4 98 89.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.0e-43 179.5 376 30.3
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 5.0e-41 173.3 95 88.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 5.0e-41 173.3 122 68.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.3e-33 147.9 124 56.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-33 147.1 93 81.7
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-32 145.6 80 83.8
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 7.5e-29 132.9 100 66.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.2e-28 131.3 290 30.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 8.3e-28 129.4 74 83.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 6.0e-26 123.2 100 64.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-14 84.0 57 61.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.9e-12 77.8 67 56.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 8.4e-12 76.3 118 49.2
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.1e-11 75.9 47 70.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.4e-11 74.7 41 78.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 9.6e-08 62.8 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.8e-07 61.2 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 2.4e-06 58.2 34 73.5


User provided reference genes

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