Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.5e-46 189.1 91 100.0
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.6e-24 115.9 104 61.5
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 7.9e-16 87.0 95 52.6
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 5.1e-15 84.3 116 44.8
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.5e-14 82.8 101 49.5
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 1.9e-14 82.4 65 60.0
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 2.5e-14 82.0 93 44.1
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 7.4e-14 80.5 107 41.1
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 1.3e-13 79.7 99 49.5
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.7e-13 79.3 72 52.8
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 3.7e-13 78.2 101 44.6
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 4.8e-13 77.8 104 40.4
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 4.8e-13 77.8 111 40.5
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 4.8e-13 77.8 107 40.2
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 6.3e-13 77.4 76 44.7
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 1.1e-12 76.6 73 49.3
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.1e-12 76.6 107 43.9
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 1.1e-12 76.6 69 52.2
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 1.1e-12 76.6 79 46.8
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.4e-12 76.3 75 49.3
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 1.4e-12 76.3 90 48.9
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.8e-12 75.9 96 44.8
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 2.4e-12 75.5 75 48.0
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-12 75.5 75 48.0
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-12 75.5 75 48.0
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.4e-12 75.5 75 48.0
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 2.4e-12 75.5 104 41.3
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 2.4e-12 75.5 98 40.8
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 2.4e-12 75.5 67 47.8
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 3.1e-12 75.1 73 49.3
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 3.1e-12 75.1 78 43.6
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 4.1e-12 74.7 109 37.6
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 4.1e-12 74.7 91 41.8
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 4.1e-12 74.7 76 44.7
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 4.1e-12 74.7 58 50.0
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 5.3e-12 74.3 106 40.6
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 5.3e-12 74.3 104 44.2
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 5.3e-12 74.3 96 38.5
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 6.9e-12 73.9 78 46.2
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 6.9e-12 73.9 68 50.0
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 6.9e-12 73.9 105 39.0
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 6.9e-12 73.9 103 39.8
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 9.1e-12 73.6 71 49.3
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 9.1e-12 73.6 70 48.6
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 9.1e-12 73.6 78 47.4
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 9.1e-12 73.6 96 41.7
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 1.2e-11 73.2 64 51.6
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 1.2e-11 73.2 106 40.6
Nitab4.5_0005728g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.2e-11 73.2 69 62.3
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 1.2e-11 73.2 66 50.0
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.5e-11 72.8 68 47.1
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.5e-11 72.8 72 50.0
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 1.5e-11 72.8 117 40.2
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.5e-11 72.8 111 43.2
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 2.0e-11 72.4 93 44.1
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 2.0e-11 72.4 99 39.4
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 2.6e-11 72.0 71 49.3
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 2.6e-11 72.0 71 53.5
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 2.6e-11 72.0 96 40.6
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 2.6e-11 72.0 62 51.6
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 2.6e-11 72.0 65 52.3
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 2.6e-11 72.0 108 40.7
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 2.6e-11 72.0 95 40.0
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 3.4e-11 71.6 76 44.7
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.4e-11 71.6 107 42.1
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 3.4e-11 71.6 107 42.1
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 3.4e-11 71.6 63 55.6
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 4.5e-11 71.2 94 39.4
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 4.5e-11 71.2 75 42.7
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 4.5e-11 71.2 64 48.4
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.5e-11 71.2 93 39.8
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 4.5e-11 71.2 93 39.8
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 4.5e-11 71.2 64 50.0
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 5.9e-11 70.9 92 39.1
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 5.9e-11 70.9 103 39.8
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 5.9e-11 70.9 64 51.6
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 7.7e-11 70.5 95 41.1
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 7.7e-11 70.5 70 50.0
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 7.7e-11 70.5 91 39.6
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 7.7e-11 70.5 92 38.0
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.0e-10 70.1 69 47.8
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 1.0e-10 70.1 66 48.5
Peaxi162Scf00332g00733 Petunia axillaris HOM05D004379 ORTHO05D005186 1.0e-10 70.1 62 64.5
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 1.0e-10 70.1 107 41.1
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.3e-10 69.7 74 51.4
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.3e-10 69.7 64 50.0
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 1.3e-10 69.7 77 44.2
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 1.7e-10 69.3 98 33.7
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 1.7e-10 69.3 79 44.3
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 1.7e-10 69.3 64 50.0
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.7e-10 69.3 64 50.0
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 2.2e-10 68.9 66 43.9
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.2e-10 68.9 66 43.9
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 2.2e-10 68.9 96 37.5
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.2e-10 68.9 66 51.5
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.2e-10 68.9 66 51.5
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.2e-10 68.9 66 51.5
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 2.2e-10 68.9 56 57.1
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 2.9e-10 68.6 63 47.6
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 2.9e-10 68.6 64 50.0
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.8e-10 68.2 94 38.3
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 3.8e-10 68.2 68 48.5
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 3.8e-10 68.2 68 48.5
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 3.8e-10 68.2 80 45.0
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 3.8e-10 68.2 90 43.3
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 3.8e-10 68.2 72 47.2
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 3.8e-10 68.2 98 36.7
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 5.0e-10 67.8 65 46.2
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 6.5e-10 67.4 108 35.2
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 6.5e-10 67.4 76 43.4
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 6.5e-10 67.4 96 40.6
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 8.5e-10 67.0 91 40.7
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 1.1e-09 66.6 105 37.1
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 1.1e-09 66.6 97 39.2
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 1.4e-09 66.2 69 44.9
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.9e-09 65.9 64 45.3
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 1.9e-09 65.9 64 45.3
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 1.9e-09 65.9 71 43.7
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.9e-09 65.9 71 43.7
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 1.9e-09 65.9 106 36.8
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 2.5e-09 65.5 101 37.6
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 2.5e-09 65.5 68 41.2
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 3.2e-09 65.1 77 42.9
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 3.2e-09 65.1 65 43.1
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 4.2e-09 64.7 94 38.3
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.2e-09 64.7 68 45.6
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 4.2e-09 64.7 88 40.9
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 5.5e-09 64.3 77 41.6
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 5.5e-09 64.3 70 44.3
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 7.2e-09 63.9 59 47.5
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 1.6e-08 62.8 95 36.8
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 1.6e-08 62.8 65 49.2
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 1.6e-08 62.8 100 37.0
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 2.7e-08 62.0 74 40.5
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.7e-08 62.0 62 46.8
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 3.6e-08 61.6 83 37.3
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 4.7e-08 61.2 101 39.6
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 6.1e-08 60.8 62 45.2
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 6.1e-08 60.8 112 35.7
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 7.9e-08 60.5 101 35.6
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 7.9e-08 60.5 103 35.0
PGSC0003DMG401021955 Solanum tuberosum HOM05D004379 ORTHO05D005186 7.9e-08 60.5 97 38.1
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.0e-07 60.1 115 37.4
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 1.0e-07 60.1 113 34.5
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.0e-07 60.1 61 44.3
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.0e-07 60.1 89 36.0
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 1.4e-07 59.7 59 44.1
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 1.8e-07 59.3 69 39.1
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 2.3e-07 58.9 68 39.7
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 3.0e-07 58.5 92 33.7
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 8.8e-07 57.0 64 40.6
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 8.8e-07 57.0 118 29.7
CARHR074360 Cardamine hirsuta HOM05D004379 ORTHO05D005186 1.1e-06 56.6 59 42.4
HPP92_017691 Vanilla planifolia HOM05D001149 ORTHO05D000970 2.0e-06 55.8 70 40.0
Thhalv10019808m.g Eutrema salsugineum HOM05D004379 ORTHO05D005186 2.6e-06 55.5 57 38.6
Sopen08g006200 Solanum pennellii HOM05D004379 ORTHO05D005186 2.6e-06 55.5 81 35.8
SEGI_35115 Sequoiadendron giganteum HOM05D001149 ORTHO05D000970 4.4e-06 54.7 68 41.2
Gohir.A02G148201 Gossypium hirsutum HOM05D001149 ORTHO05D000970 5.7e-06 54.3 63 42.9
Gohir.D03G032250 Gossypium hirsutum HOM05D001149 ORTHO05D000970 5.7e-06 54.3 63 42.9
CiPaw.03G143800 Carya illinoinensis HOM05D001149 ORTHO05D000970 9.7e-06 53.5 128 32.8
DCAR_009540 Daucus carota HOM05D001006 ORTHO05D000868 9.7e-06 53.5 69 42.0


User provided reference genes

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