Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 5.5e-157 557.8 319 100.0
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 5.6e-117 424.9 319 82.8
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 3.2e-88 329.3 272 69.5
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.6e-84 317.0 310 57.1
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 7.2e-80 301.6 247 68.8
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 5.7e-77 292.0 280 58.2
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 3.1e-75 286.2 281 66.5
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 3.1e-75 286.2 251 72.1
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 4.1e-75 285.8 243 69.1
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 5.3e-75 285.4 251 71.7
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 5.3e-75 285.4 251 71.7
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 5.3e-75 285.4 251 71.7
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 1.5e-74 283.9 271 62.7
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 2.0e-74 283.5 251 71.7
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 2.9e-73 279.6 252 67.1
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 2.9e-73 279.6 245 72.2
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 3.8e-73 279.3 247 69.6
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 8.5e-73 278.1 252 60.7
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.4e-72 277.3 260 68.1
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.9e-72 276.9 276 66.7
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 2.7e-71 273.1 226 81.0
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 1.0e-70 271.2 248 60.1
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 1.4e-70 270.8 239 72.0
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 5.1e-70 268.9 249 61.8
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 8.8e-70 268.1 251 60.2
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 5.7e-69 265.4 246 59.8
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 1.3e-68 264.2 247 59.5
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 2.8e-68 263.1 256 67.6
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 6.3e-68 261.9 249 57.0
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 8.2e-68 261.5 246 60.6
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 1.1e-67 261.2 253 59.3
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 4.1e-67 259.2 257 53.7
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 5.3e-67 258.8 252 60.7
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 7.0e-67 258.5 239 64.9
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 2.0e-66 256.9 247 58.3
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 2.6e-66 256.5 245 57.1
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 2.9e-65 253.1 183 65.6
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 5.0e-65 252.3 253 66.8
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 5.0e-65 252.3 310 49.4
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 6.5e-65 251.9 247 53.0
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 8.5e-65 251.5 244 62.7
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 1.9e-64 250.4 275 62.9
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 6.1e-63 245.4 278 61.9
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 8.0e-63 245.0 246 55.7
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 1.8e-62 243.8 279 59.9
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 2.3e-62 243.4 251 62.5
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 4.0e-62 242.7 259 59.8
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 4.0e-62 242.7 250 60.0
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 5.2e-62 242.3 242 64.0
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 5.2e-62 242.3 249 57.4
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 6.7e-62 241.9 261 49.8
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 1.1e-61 241.1 245 57.1
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.6e-61 240.0 285 56.1
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 3.3e-61 239.6 264 58.0
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 4.4e-61 239.2 245 59.2
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 5.7e-61 238.8 253 62.8
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 1.3e-60 237.7 293 51.5
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 1.3e-60 237.7 228 64.9
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.7e-60 237.3 263 56.3
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 2.2e-60 236.9 253 54.9
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 2.8e-60 236.5 179 63.1
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 3.7e-60 236.1 248 63.7
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 7.0e-59 231.9 338 40.8
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 1.3e-57 227.6 237 57.8
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 3.2e-56 223.0 249 53.8
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 5.5e-56 222.2 269 58.4
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 9.4e-56 221.5 245 59.2
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 8.0e-55 218.4 246 57.7
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 3.0e-54 216.5 272 44.9
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 3.4e-53 213.0 273 43.6
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 5.7e-53 212.2 245 59.6
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 1.3e-52 211.1 261 52.1
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 2.2e-52 210.3 245 53.1
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 3.1e-51 206.5 175 57.1
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 3.1e-51 206.5 240 52.9
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 7.0e-51 205.3 238 53.8
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 9.1e-51 204.9 307 48.2
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 1.2e-50 204.5 257 52.9
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 1.6e-50 204.1 237 55.7
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 1.6e-50 204.1 287 47.0
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 2.7e-50 203.4 225 60.4
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 2.7e-50 203.4 225 56.0
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 3.8e-49 199.5 256 59.4
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 4.2e-48 196.1 239 51.0
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 4.2e-48 196.1 239 51.0
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 3.6e-47 193.0 172 66.3
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.0e-46 191.4 269 49.4
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.8e-46 190.7 254 51.6
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 2.0e-45 187.2 243 48.6
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 2.6e-45 186.8 287 47.0
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 5.7e-45 185.7 238 50.4
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 2.2e-44 183.7 247 55.9
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 1.4e-43 181.0 240 54.6
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 1.8e-43 180.6 249 51.4
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 3.1e-43 179.9 243 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 1.6e-42 177.6 248 49.6
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 1.6e-42 177.6 157 74.5
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 7.7e-42 175.3 226 43.4
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 1.0e-41 174.9 256 49.6
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 2.3e-41 173.7 158 57.0
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 1.9e-40 170.6 136 61.8
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 2.1e-39 167.2 290 39.3
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 4.7e-39 166.0 247 51.0
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 8.0e-39 165.2 182 49.5
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 1.0e-38 164.9 228 54.8
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 1.0e-38 164.9 228 54.8
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 1.0e-33 148.3 140 52.1
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 2.5e-32 143.7 120 57.5
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 1.0e-30 138.3 184 40.2
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 8.1e-23 112.1 138 40.6
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 7.5e-21 105.5 291 36.8
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.7e-17 94.4 114 43.0
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 3.0e-17 93.6 106 70.8
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 8.4e-12 75.5 44 75.0
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 1.9e-11 74.3 99 67.7
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 4.1e-11 73.2 43 76.7
A01p12600 Brassica napus HOM05D000022 ORTHO05D020144 2.1e-07 60.8 73 46.6
Medtr7g047660 Medicago truncatula HOM05D052963 ORTHO05D007970 2.1e-07 60.8 64 46.9


User provided reference genes

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