Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.7e-100 367.9 183 100.0
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.3e-99 365.5 183 99.5
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.5e-98 362.8 183 98.4
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 6.5e-94 347.4 183 93.4
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 89.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 3.4e-90 335.1 182 88.5
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 88.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 89.1
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 86.9
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 86.9
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 89.1
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 87.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 87.4
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 86.9
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 88.5
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 87.4
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 87.4
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 85.2
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 87.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.3
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 86.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 84.7
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 84.2
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.9
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.9e-87 324.3 181 85.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.9
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 86.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 85.8
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 85.8
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 84.7
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 83.6
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 85.8
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 85.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.7
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.9e-85 319.3 181 85.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 84.2
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.1
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 82.0
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 83.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 82.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 81.4
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.6
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 8.0e-84 313.9 182 81.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.8e-83 312.8 182 80.8
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.5
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 81.4
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 79.8
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 78.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 80.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.0
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 82.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 79.2
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 2.6e-82 308.9 182 80.8
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.2
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 5.7e-82 307.8 190 78.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 80.9
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.3
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 81.4
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 80.7
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.8e-81 305.4 182 78.6
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 79.8
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 79.6
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.4e-80 303.1 179 81.0
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.4e-80 303.1 179 81.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.4e-80 303.1 179 80.4
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 79.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 78.5
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.4e-80 302.4 179 80.4
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 80.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 78.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 80.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 78.5
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 7.0e-80 300.8 179 81.0
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 78.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 78.5
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 79.2
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 79.8
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 5.9e-79 297.7 179 80.4
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 78.3
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 152 95.4
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.7
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.3e-78 295.8 184 77.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.3e-78 295.8 182 80.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.9e-78 295.4 179 78.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 76.5
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 8.6e-78 293.9 184 77.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 77.6
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 77.2
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 77.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 76.5
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 8.0e-76 287.3 184 75.5
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 5.2e-75 284.6 183 72.7
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 5.2e-75 284.6 228 64.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.4e-74 281.6 219 67.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.3e-73 280.0 182 73.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.4e-73 277.7 185 72.4
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 7.0e-72 274.2 183 69.4
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.0e-71 272.7 155 81.3
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.7e-71 272.3 183 76.0
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.3e-70 270.0 183 68.3
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.7e-70 269.6 184 69.6
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.0e-70 268.1 155 82.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.2e-68 263.5 183 72.1
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.6e-66 255.8 152 79.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 2.4e-64 249.2 181 64.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 1.0e-62 243.8 188 67.6
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.0e-62 243.8 181 69.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.3e-62 243.4 181 66.9
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.5e-61 239.2 136 82.4
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 7.3e-61 237.7 183 66.7
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.4e-56 223.4 138 75.4
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.0e-54 217.2 183 62.8
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.0e-54 217.2 155 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-52 208.8 152 66.4
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.6e-52 208.8 178 65.2
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.7e-52 208.4 175 60.0
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 6.2e-52 208.0 158 63.9
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.5e-45 186.0 149 61.1
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 4.3e-45 185.3 102 87.3
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 5.6e-45 184.9 186 47.8
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.1e-44 183.0 158 58.9
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 9.0e-43 177.6 102 81.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-42 175.6 100 85.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 5.8e-42 174.9 100 81.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 99 82.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 3.8e-41 172.2 132 62.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-40 169.9 106 75.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 9.3e-40 167.5 134 64.9
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.5e-34 148.7 99 69.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.3e-33 147.1 105 64.8
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 2.9e-33 146.0 81 86.4
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.1e-29 134.0 78 82.1
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.3e-29 132.1 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.5e-26 123.6 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.9e-24 116.7 106 59.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.8e-20 102.8 68 67.6
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.9e-17 92.8 106 51.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 8.4e-17 91.3 52 82.7
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-15 87.0 127 44.9
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.1e-08 64.3 37 75.7
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-08 63.2 121 37.2
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.2e-08 62.4 81 45.7
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 3.9e-06 55.8 98 33.7
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 111 29.7


User provided reference genes

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