Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.0e-167 592.4 316 100.0
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 7.2e-157 557.4 323 92.0
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-113 412.9 337 74.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.3e-109 398.7 339 72.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.4e-104 381.7 250 82.8
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.5e-93 346.3 324 64.2
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-92 343.6 293 73.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.3e-84 317.4 339 59.3
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 6.4e-81 305.1 351 56.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 8.4e-81 304.7 335 57.6
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.4e-80 303.1 336 57.4
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.2e-80 302.4 325 60.3
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 4.6e-79 298.9 317 60.3
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.3e-78 296.6 267 65.9
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.1e-77 294.3 229 72.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 4.3e-77 292.4 335 56.1
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 5.6e-77 292.0 328 56.4
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 5.6e-77 292.0 328 56.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.3e-76 290.8 312 55.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 8.1e-76 288.1 323 57.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.4e-75 286.6 253 67.6
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.5e-74 283.9 311 60.5
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.6e-74 283.1 322 57.5
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.7e-73 280.4 310 59.7
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 6.4e-73 278.5 237 67.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.1e-72 277.7 329 56.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-72 277.3 306 57.5
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.4e-72 275.4 321 53.6
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 7.1e-72 275.0 265 62.6
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 9.3e-72 274.6 317 56.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 9.3e-72 274.6 295 58.3
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.2e-71 274.2 260 61.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.1e-71 273.5 315 56.2
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.7e-71 273.1 223 67.7
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.0e-71 271.9 311 56.9
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.9e-71 271.6 312 59.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.0e-70 271.2 248 63.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.3e-70 270.0 314 53.8
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.3e-70 270.0 315 55.9
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 3.0e-70 269.6 321 55.1
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 3.9e-70 269.2 326 58.0
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.1e-70 268.9 223 68.6
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-69 267.7 306 56.9
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.1e-69 267.7 320 54.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.5e-69 266.5 320 53.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.3e-69 266.2 235 66.4
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 7.4e-69 265.0 290 55.5
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 7.4e-69 265.0 253 61.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 7.4e-69 265.0 320 53.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.3e-68 264.2 306 56.2
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.4e-67 260.0 270 62.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.4e-67 260.0 235 66.0
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.0e-67 259.2 235 66.0
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.3e-67 258.8 248 66.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 6.9e-67 258.5 235 65.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.2e-66 257.7 235 65.5
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.0e-66 256.9 266 59.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.5e-66 255.8 224 65.6
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.0e-65 254.6 248 61.3
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.7e-65 253.8 312 51.6
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.9e-64 250.4 327 50.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.9e-64 250.4 344 52.6
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.9e-64 250.4 315 53.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.2e-64 249.6 295 54.9
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.2e-64 249.2 326 55.8
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.2e-64 249.2 316 51.3
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 5.5e-64 248.8 321 51.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 7.1e-64 248.4 321 49.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 7.1e-64 248.4 318 51.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 9.3e-64 248.1 322 54.0
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.6e-63 247.3 305 52.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.6e-63 247.3 296 54.1
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.7e-63 246.5 338 53.0
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.7e-63 246.5 321 51.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-63 246.5 296 53.7
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.5e-63 246.1 300 53.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.3e-62 243.4 297 53.5
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.0e-62 243.0 310 53.5
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 8.7e-62 241.5 300 52.7
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 8.7e-62 241.5 313 52.1
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.5e-61 240.7 222 64.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.3e-61 239.2 255 58.8
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.3e-61 239.2 314 51.6
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.4e-61 238.4 296 53.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.3e-60 237.7 316 51.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.6e-60 237.3 320 51.9
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.6e-60 237.3 311 55.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.8e-60 236.5 285 54.7
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.1e-59 234.6 320 50.6
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.1e-59 234.6 296 51.0
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.8e-59 233.8 308 51.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 3.1e-59 233.0 315 50.8
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 6.9e-59 231.9 265 57.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.0e-58 230.3 314 51.3
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.8e-57 226.1 253 54.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 5.0e-57 225.7 295 54.2
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.4e-56 224.2 233 60.1
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.2e-55 221.1 309 53.1
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 4.6e-55 219.2 229 59.4
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.8e-54 217.2 175 64.6
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 5.1e-54 215.7 304 49.7
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.7e-54 215.3 260 57.3
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 4.3e-53 212.6 292 52.7
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.2e-52 210.3 237 51.1
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 8.2e-52 208.4 352 44.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-51 208.0 242 57.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.4e-51 207.6 241 54.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.4e-51 207.6 236 57.2
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.8e-51 207.2 311 48.2
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.1e-51 206.5 286 51.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.5e-50 204.1 309 47.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.6e-50 203.4 278 54.3
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 3.4e-50 203.0 240 56.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.3e-49 201.1 254 55.1
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.7e-49 200.7 252 55.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 3.8e-49 199.5 268 53.0
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 5.0e-49 199.1 265 53.2
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 5.0e-49 199.1 265 53.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 6.5e-49 198.7 243 54.3
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.5e-49 198.7 346 43.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-48 197.2 268 52.6
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-48 196.8 255 52.9
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 3.2e-48 196.4 235 55.7
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.2e-48 196.1 250 52.8
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.2e-48 196.1 306 47.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.2e-48 195.3 251 54.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 9.4e-48 194.9 263 52.1
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.0e-46 191.4 259 51.7
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.8e-46 190.7 252 50.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-46 190.7 270 50.4
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 7.4e-45 185.3 301 46.5
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.3e-44 184.5 248 49.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 6.3e-44 182.2 328 48.2
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 4.1e-43 179.5 267 48.7
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 9.1e-43 178.3 261 48.7
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 9.1e-43 178.3 261 48.7
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-42 177.2 263 49.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.4e-42 176.4 263 48.7
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 7.7e-42 175.3 259 49.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 3.8e-41 172.9 276 44.9
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.4e-40 171.0 228 53.1
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 9.4e-40 168.3 220 50.0
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 4.4e-37 159.5 112 74.1
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.3e-36 157.9 165 55.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.4e-35 153.7 261 44.4
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.1e-35 153.3 333 39.0
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.2e-34 151.4 294 42.2
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-34 150.6 293 41.3
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.9e-34 149.1 293 41.0
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 7.7e-34 148.7 291 41.9
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.0e-33 148.3 293 41.0
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.7e-31 140.2 281 41.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 3.6e-31 139.8 259 42.5
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.7e-31 139.4 282 41.5
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.8e-30 137.5 192 42.7
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.3e-29 133.3 115 66.1
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.5e-24 117.9 248 38.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.7e-23 113.6 175 44.0
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 8.8e-22 108.6 150 46.0
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.1e-19 101.7 64 92.2
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 4.1e-19 99.8 165 44.2
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 7.0e-19 99.0 93 57.0


User provided reference genes

Program Settings