Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.4e-30 133.3 70 100.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.8e-29 130.6 69 95.7
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 4.8e-29 130.6 69 95.7
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 4.8e-29 130.6 69 95.7
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.8e-29 130.6 69 95.7
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 5.3e-28 127.1 69 92.8
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 88.4
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 88.4
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 89.9
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 3.4e-27 124.4 69 88.4
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 5.9e-27 123.6 69 88.4
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.9e-27 123.6 69 87.0
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 5.9e-27 123.6 69 87.0
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 5.9e-27 123.6 69 88.4
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 7.7e-27 123.2 69 88.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 7.7e-27 123.2 69 88.4
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 7.7e-27 123.2 69 88.4
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-26 122.5 69 85.5
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-26 122.5 69 85.5
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 2.9e-26 121.3 69 84.1
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 84.1
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 5.0e-26 120.6 69 85.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 1.4e-25 119.0 69 84.1
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.4e-25 119.0 69 82.6
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 1.4e-25 119.0 69 82.6
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.4e-25 119.0 69 82.6
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.4e-25 119.0 69 82.6
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 3.2e-25 117.9 69 84.1
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 9.4e-25 116.3 69 81.2
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.2e-24 115.9 62 88.7
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.4e-23 112.5 67 82.1
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 1.8e-23 112.1 67 85.1
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 6.7e-23 110.2 66 80.3
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.0e-22 108.6 69 79.7
Gorai.006G035300 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.3e-21 105.9 62 83.9
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 3.7e-21 104.4 54 88.9
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-20 102.4 60 90.0
Solyc03g013620.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.1e-20 100.9 55 96.4
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 1.0e-18 96.3 50 88.0
BolC6t36206H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-18 94.0 55 85.5
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.5e-17 91.7 50 88.0
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 5.5e-17 90.5 61 75.4
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.2e-15 84.0 50 80.0
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 8.8e-15 83.2 69 69.6
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 7.4e-14 80.1 45 91.1
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 2.2e-13 78.6 46 84.8
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 3.1e-12 74.7 66 54.5
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-09 65.5 43 76.7
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.2e-08 62.8 47 72.3
BolSC49t61138H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-08 62.0 35 85.7
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 2.7e-08 61.6 52 61.5
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 8.0e-08 60.1 30 93.3
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 1.4e-07 59.3 30 90.0
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 1.4e-07 59.3 30 90.0
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.3e-07 58.5 67 50.7
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.2e-07 57.4 30 86.7
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 6.7e-07 57.0 69 43.5
Hund04278 Selenicereus undatus HOM05D001750 ORTHO05D001825 3.3e-06 54.7 43 62.8
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 7.5e-06 53.5 69 43.5


User provided reference genes

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