Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 1.4e-122 443.0 224 100.0
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 5.5e-119 431.0 224 96.9
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.7e-108 394.4 224 88.4
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 8.2e-107 390.6 221 87.8
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 9.4e-103 377.1 212 89.2
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 2.0e-97 359.4 200 91.0
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 2.2e-96 355.9 243 75.7
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 3.2e-95 352.1 224 78.1
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 2.7e-94 349.0 223 77.1
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 1.8e-93 346.3 224 78.1
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 3.0e-93 345.5 218 78.0
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 8.8e-93 344.0 224 76.8
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.2e-92 343.6 224 76.8
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 2.6e-92 342.4 224 76.3
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 7.5e-92 340.9 224 77.2
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 2.2e-91 339.3 224 75.0
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 2.8e-91 339.0 224 75.9
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 1.1e-90 337.0 224 76.3
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 2.4e-90 335.9 224 77.2
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 2.4e-90 335.9 221 77.4
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 3.1e-90 335.5 220 76.4
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 3.1e-90 335.5 218 75.7
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 5.4e-90 334.7 227 75.8
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 7.0e-90 334.3 224 76.3
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 7.0e-90 334.3 221 76.0
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 7.0e-90 334.3 215 76.7
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 9.2e-90 334.0 224 75.9
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 1.6e-89 333.2 222 75.7
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.6e-89 333.2 207 81.2
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.0e-89 332.8 222 73.9
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 3.5e-89 332.0 228 75.9
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.9e-89 331.3 221 75.1
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 5.9e-89 331.3 221 76.0
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 7.7e-89 330.9 222 74.3
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.3e-88 330.1 220 74.1
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.7e-88 329.7 224 75.9
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.7e-88 329.7 220 73.6
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 2.3e-88 329.3 219 76.3
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 2.3e-88 329.3 224 74.6
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 3.8e-88 328.6 214 76.6
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 6.6e-88 327.8 220 75.0
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 6.6e-88 327.8 224 75.0
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.5e-87 326.6 222 74.3
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 3.3e-87 325.5 226 72.1
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 4.3e-87 325.1 222 72.5
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 5.6e-87 324.7 224 72.3
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 7.3e-87 324.3 219 73.1
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 9.5e-87 323.9 218 75.7
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 9.5e-87 323.9 219 74.9
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 1.2e-86 323.6 215 75.3
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 3.6e-86 322.0 221 72.4
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 6.1e-86 321.2 215 74.9
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 6.1e-86 321.2 218 76.1
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.0e-85 320.5 224 70.5
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 1.0e-85 320.5 219 73.5
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 1.4e-85 320.1 220 71.4
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.8e-85 319.7 222 73.0
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 2.3e-85 319.3 217 71.9
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 4.0e-85 318.5 224 72.8
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.2e-84 317.0 245 67.8
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 1.5e-84 316.6 224 70.1
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 3.4e-84 315.5 223 72.6
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 7.5e-84 314.3 217 73.3
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 7.5e-84 314.3 217 73.3
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 9.8e-84 313.9 217 73.7
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 9.8e-84 313.9 224 69.6
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 2.2e-83 312.8 217 72.8
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 9.2e-82 307.4 219 71.7
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 9.2e-82 307.4 224 70.1
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 1.2e-81 307.0 222 72.5
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 4.6e-81 305.1 217 71.4
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.0e-80 303.9 224 71.4
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 1.3e-80 303.5 217 71.0
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.9e-79 299.7 222 70.3
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 4.3e-79 298.5 220 70.0
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 1.2e-78 297.0 216 68.5
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.2e-78 297.0 221 67.9
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 4.7e-78 295.0 220 68.2
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 8.0e-78 294.3 216 68.1
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 1.0e-77 293.9 260 62.7
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 1.0e-77 293.9 226 66.8
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 2.0e-76 289.7 217 68.2
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 9.8e-76 287.3 207 73.9
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.3e-75 287.0 219 66.7
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 2.4e-74 282.7 211 70.1
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 3.2e-74 282.3 259 61.0
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 7.0e-74 281.2 246 61.8
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 7.8e-73 277.7 195 73.8
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 5.0e-72 275.0 230 64.3
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 5.0e-72 275.0 246 63.0
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 5.0e-72 275.0 207 69.1
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.6e-71 271.6 223 66.4
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 4.7e-70 268.5 178 73.0
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 1.8e-69 266.5 220 63.2
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.9e-63 246.5 271 55.0
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 5.8e-60 235.0 208 62.0
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 7.6e-60 234.6 221 56.6
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 1.1e-58 230.7 154 74.7
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 5.4e-58 228.4 217 58.1
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 4.6e-57 225.3 160 68.8
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.7e-56 223.4 153 72.5
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 1.2e-54 217.2 228 53.9
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 4.4e-52 208.8 195 60.0
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 9.3e-50 201.1 143 68.5
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 3.9e-48 195.7 120 78.3
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 3.6e-46 189.1 222 50.0
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 1.4e-45 187.2 201 55.7
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 5.1e-40 168.7 221 43.9
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 3.1e-37 159.5 141 57.4
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.9e-34 150.2 110 69.1
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 7.1e-34 148.3 385 32.2
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 2.7e-33 146.4 85 81.2
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.1e-26 124.4 84 67.9
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 1.4e-21 107.5 70 72.9
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 3.4e-20 102.8 136 47.1
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 1.9e-18 97.1 66 78.8
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 4.2e-18 95.9 50 90.0
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.2e-17 94.4 67 74.6
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 1.0e-16 91.3 67 65.7
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 3.0e-16 89.7 66 71.2
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 1.9e-15 87.0 68 66.2
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.5e-12 75.9 210 29.5
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 3.8e-11 72.8 53 67.9
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 1.4e-10 70.9 98 41.8
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.0e-08 64.7 52 63.5
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 8.8e-08 61.6 52 63.5
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 7.4e-07 58.5 37 78.4


User provided reference genes

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