Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.7e-259 898.3 501 100.0
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.8e-253 877.9 501 94.2
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.9e-250 867.8 501 97.2
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.5e-228 795.4 503 84.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.2e-219 766.5 504 86.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.0e-215 750.7 504 84.9
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.7e-203 711.4 485 85.2
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.6e-171 606.7 506 67.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.8e-170 603.2 520 65.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 7.6e-169 597.8 509 68.8
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 9.9e-169 597.4 514 67.9
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.8e-168 595.5 511 67.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 6.0e-166 588.2 509 65.8
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.3e-164 582.4 503 65.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.1e-162 577.4 509 65.6
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.4e-162 577.0 502 63.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 9.9e-161 570.9 504 64.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.7e-160 570.1 496 64.3
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.9e-160 569.3 491 67.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 8.4e-160 567.8 509 61.7
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-159 566.6 496 64.1
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.7e-158 562.8 499 63.1
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.9e-158 561.2 497 63.2
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 8.7e-157 557.8 500 64.8
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 4.8e-155 552.0 505 61.8
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-154 550.4 502 66.9
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.4e-154 550.4 504 60.5
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 3.1e-154 549.3 484 63.6
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.5e-153 545.4 431 67.5
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 4.5e-153 545.4 498 62.4
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 7.6e-153 544.7 490 63.7
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 4.9e-152 542.0 500 63.6
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 6.5e-152 541.6 511 61.4
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-151 540.4 498 64.5
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.1e-150 536.6 503 59.0
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 4.6e-150 535.4 495 63.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-149 533.5 479 66.8
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.8e-149 533.5 512 60.2
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.1e-149 531.9 479 66.6
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.3e-148 529.3 486 63.8
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 3.3e-148 529.3 483 61.1
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 9.7e-148 527.7 490 62.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.3e-147 527.3 489 62.2
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.8e-147 526.2 484 61.4
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.7e-147 525.8 396 69.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.3e-147 525.0 483 60.9
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 6.3e-147 525.0 507 63.1
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-146 524.2 462 61.3
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 9.0e-146 521.2 495 61.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 9.0e-146 521.2 490 60.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 3.4e-145 519.2 509 58.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.3e-144 517.3 499 59.3
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.2e-144 516.5 477 58.7
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.9e-144 516.2 451 63.6
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.9e-144 516.2 490 59.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.5e-144 515.0 500 63.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.9e-143 513.5 476 59.5
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-143 513.5 385 74.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.2e-143 512.7 493 60.2
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 3.2e-143 512.7 494 59.3
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 3.2e-143 512.7 506 56.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.2e-143 512.3 508 62.0
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.5e-143 511.9 487 62.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 9.4e-143 511.1 481 62.6
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.7e-142 509.6 473 60.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 7.9e-142 508.1 483 61.1
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.0e-141 507.7 479 59.7
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.0e-141 507.7 486 60.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.0e-141 507.7 495 57.2
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 3.0e-141 506.1 490 61.4
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.1e-141 505.4 424 65.6
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.1e-141 505.4 482 60.8
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.8e-141 504.6 473 60.0
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.0e-140 503.4 480 63.5
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.5e-140 503.1 482 58.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.5e-140 503.1 432 63.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.7e-140 501.9 491 54.6
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 5.7e-140 501.9 488 63.3
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 4.1e-138 495.7 483 59.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.3e-138 495.4 413 64.6
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 5.3e-138 495.4 486 60.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 9.1e-138 494.6 495 57.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.5e-137 493.8 478 61.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.0e-137 493.4 480 60.2
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 4.5e-137 492.3 502 59.4
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 5.9e-137 491.9 479 64.3
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.3e-136 490.7 491 62.7
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.3e-136 490.7 475 57.3
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.7e-136 490.3 383 70.8
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.9e-136 489.6 496 56.9
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.4e-135 487.3 484 56.8
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.4e-135 487.3 491 62.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.2e-135 485.7 412 64.3
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 7.2e-135 485.0 487 58.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.6e-134 483.8 486 55.1
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 2.7e-134 483.0 485 60.0
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.7e-134 482.3 483 58.8
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 7.9e-134 481.5 479 58.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.8e-133 480.3 480 59.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.3e-133 479.9 481 61.5
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.0e-133 479.6 485 55.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 5.1e-133 478.8 481 61.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 6.7e-133 478.4 477 55.3
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.5e-132 477.2 506 57.5
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 4.4e-132 475.7 519 53.2
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 7.4e-132 474.9 494 54.9
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.3e-131 474.2 501 51.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 6.3e-131 471.9 479 55.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-130 470.7 482 56.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.8e-130 470.3 479 59.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 4.1e-130 469.2 479 58.9
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 7.0e-130 468.4 433 62.1
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.2e-129 467.6 478 58.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.0e-128 464.5 478 58.6
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.0e-128 462.2 478 57.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-127 460.3 479 58.0
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.9e-127 460.3 480 56.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 3.2e-127 459.5 452 58.4
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.6e-126 457.2 438 55.5
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.7e-126 456.4 481 57.6
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 2.7e-126 456.4 485 54.0
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.6e-126 456.1 484 55.2
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 6.1e-126 455.3 488 53.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 8.0e-126 454.9 483 53.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 8.0e-126 454.9 490 54.7
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.8e-125 453.8 482 57.3
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.8e-125 453.8 480 56.5
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-125 453.4 473 57.3
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.9e-125 452.6 487 57.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.8e-123 446.4 480 55.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.8e-123 446.4 479 57.0
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 3.7e-123 446.0 480 55.8
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.4e-122 444.1 507 54.8
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.4e-122 444.1 491 56.0
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-122 443.7 313 71.6
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-121 441.0 455 56.0
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 4.5e-121 439.1 480 55.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-120 438.0 490 55.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 8.5e-120 434.9 385 65.5
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.1e-119 434.5 488 53.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-119 434.5 495 54.7
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 4.2e-119 432.6 435 54.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-118 431.0 491 54.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.6e-116 423.3 455 55.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.7e-115 420.6 283 72.4
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.8e-102 376.7 505 44.6
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.4e-100 369.8 380 53.9
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.5e-97 359.4 483 48.4
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 7.8e-89 332.0 384 45.6
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 9.5e-87 325.1 267 68.9
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.0e-84 317.4 358 49.7
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.8e-70 270.4 191 73.8
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.3e-59 235.0 371 40.4
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.3e-54 218.4 360 36.9
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.3e-54 218.4 192 68.2
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 6.0e-49 199.5 262 45.0
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.1e-46 191.0 117 80.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.3e-40 171.0 356 37.4
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.1e-38 164.5 126 77.8
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-37 161.8 144 56.9
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.1e-33 147.9 297 34.7
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 3.5e-33 147.1 99 69.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.7e-32 142.5 134 57.5
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 8.2e-30 136.0 142 54.9
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-29 135.2 129 56.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.1e-25 119.8 99 59.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-23 115.2 166 42.2
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-23 115.2 166 42.2
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 5.7e-23 113.2 281 29.9
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 2.2e-22 111.3 95 58.9
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.8e-21 108.2 70 72.9
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.7e-17 94.4 315 31.7
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.8e-14 84.3 55 74.5
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 5.2e-08 63.5 53 60.4


User provided reference genes

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