Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 7.0e-193 677.2 358 100.0
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 4.3e-158 561.6 358 84.6
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.8e-156 556.2 358 82.1
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.3e-151 540.0 364 78.3
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.0e-144 514.6 360 79.4
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 7.7e-99 364.8 331 57.1
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 3.8e-98 362.5 330 58.5
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 5.0e-98 362.1 341 56.9
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.2e-96 357.5 336 54.2
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.7e-96 355.5 334 56.3
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 6.1e-96 355.1 337 53.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 2.0e-94 350.1 343 54.5
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.8e-93 346.3 337 52.2
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 8.3e-93 344.7 327 53.5
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 2.4e-92 343.2 335 53.4
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 9.2e-92 341.3 341 51.9
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.5e-91 339.3 344 52.6
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.5e-91 339.0 346 52.6
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.0e-90 337.8 346 52.6
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-90 337.8 346 52.6
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-90 337.8 346 52.6
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-90 337.8 346 52.6
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.3e-90 337.4 323 54.2
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.5e-89 333.2 323 53.9
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 4.3e-89 332.4 335 52.5
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 9.5e-89 331.3 332 50.6
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 1.2e-88 330.9 321 51.4
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.1e-88 330.1 321 51.7
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 4.7e-88 328.9 328 51.5
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.8e-87 327.0 346 50.9
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 1.2e-86 324.3 331 49.5
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.2e-86 324.3 343 50.4
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 5.8e-86 322.0 317 51.1
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.7e-85 319.3 343 48.1
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.7e-82 310.5 329 48.3
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 2.1e-80 303.5 329 50.2
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.8e-80 303.1 311 49.8
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.6e-80 302.8 336 46.1
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.4e-79 300.8 328 49.4
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.3e-79 300.1 318 49.4
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 3.1e-79 299.7 343 46.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.1e-79 299.7 340 47.4
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 4.0e-79 299.3 344 46.5
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.5e-78 297.4 329 48.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.5e-78 297.4 320 50.6
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 3.4e-78 296.2 335 46.0
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 9.8e-78 294.7 350 46.6
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.7e-77 293.9 314 48.4
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.1e-76 291.2 316 47.5
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.6e-75 287.3 329 47.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 2.7e-75 286.6 332 46.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 3.5e-75 286.2 339 44.5
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 6.0e-75 285.4 331 43.5
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 7.8e-75 285.0 326 46.3
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.3e-74 283.5 343 44.9
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 3.9e-74 282.7 305 49.2
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 3.9e-74 282.7 337 49.9
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 5.0e-74 282.3 337 45.7
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 8.6e-74 281.6 337 44.5
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.9e-73 280.4 325 44.9
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 9.5e-73 278.1 331 44.7
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 9.5e-73 278.1 349 44.1
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 1.6e-72 277.3 346 41.6
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 2.1e-72 276.9 341 44.9
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 3.6e-72 276.2 346 43.9
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 6.2e-72 275.4 329 47.7
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 6.2e-72 275.4 309 47.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 6.2e-72 275.4 311 45.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 8.1e-72 275.0 345 43.2
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.4e-71 274.2 311 45.0
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.5e-70 270.8 318 46.2
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.7e-69 267.3 336 43.2
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.7e-69 267.3 313 45.0
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 3.7e-69 266.2 316 44.9
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 3.7e-69 266.2 316 44.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 4.9e-69 265.8 322 45.0
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 4.9e-69 265.8 322 45.0
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 4.9e-69 265.8 322 45.0
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.4e-68 263.5 352 41.5
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.6e-67 260.8 318 47.8
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 4.6e-67 259.2 345 42.6
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 6.0e-67 258.8 299 44.8
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 7.8e-67 258.5 348 41.1
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.5e-65 254.2 285 44.6
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.9e-65 253.8 324 42.6
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 4.3e-65 252.7 312 45.2
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 2.1e-64 250.4 322 43.2
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 2.8e-64 250.0 308 45.1
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.8e-64 250.0 241 54.8
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.2e-62 244.6 316 43.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 4.4e-62 242.7 320 43.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.7e-61 240.7 306 44.4
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 6.6e-58 228.8 346 38.7
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.1e-57 228.0 310 44.5
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 3.6e-56 223.0 316 42.4
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.0e-54 217.2 340 37.9
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.3e-53 214.5 316 40.2
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 8.7e-50 201.8 336 36.9
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 1.1e-47 194.9 202 46.5
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.5e-43 179.9 249 42.2
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.8e-42 177.6 220 41.4
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 5.6e-41 172.6 347 34.6
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 4.0e-39 166.4 315 35.6
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 3.4e-38 163.3 243 41.2
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.1e-36 158.3 130 58.5
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.9e-36 157.5 323 31.3
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 9.3e-36 155.2 182 46.7
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 1.2e-35 154.8 341 35.5
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 2.7e-35 153.7 318 35.5
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 3.5e-35 153.3 157 49.0
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.1e-34 149.4 172 47.1
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.4e-31 141.4 301 31.6
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 6.9e-31 139.0 130 52.3
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.4e-30 136.7 162 41.4
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.6e-27 127.9 103 56.3
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 7.4e-25 119.0 95 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 9.7e-25 118.6 270 31.9
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 4.6e-19 99.8 131 45.0
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 1.4e-18 98.2 107 48.6
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.8e-18 97.8 108 47.2
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.8e-18 97.8 108 47.2
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.8e-18 97.8 108 47.2
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-18 97.1 104 43.3
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 3.0e-18 97.1 104 43.3
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.9e-18 96.7 176 34.7
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 5.1e-18 96.3 107 46.7
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 5.1e-18 96.3 107 47.7
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 5.1e-18 96.3 107 46.7
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 3.7e-16 90.1 91 46.2
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-15 88.6 156 35.3
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.2e-14 85.1 61 63.9
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 5.9e-14 82.8 97 44.3
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 3.2e-12 77.0 79 44.3
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 5.9e-06 56.2 104 31.7


User provided reference genes

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