Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 0.0e+00 1091.6 554 100.0
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 8.9e-304 1046.2 546 92.7
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 2.6e-303 1044.6 546 92.5
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 4.6e-300 1033.9 543 96.3
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 2.6e-271 938.3 552 84.2
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 7.6e-271 936.8 552 83.2
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 2.9e-270 934.9 543 86.2
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.1e-269 930.2 543 86.9
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 7.1e-269 930.2 541 86.5
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 9.3e-269 929.9 545 82.8
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.2e-268 929.5 545 82.0
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.2e-268 929.5 545 86.2
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.2e-268 929.5 543 86.0
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.6e-268 929.1 543 85.5
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 1.6e-268 929.1 543 85.5
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 2.7e-268 928.3 543 86.4
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 7.9e-268 926.8 543 85.1
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 4.3e-266 921.0 552 80.4
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 2.8e-265 918.3 544 80.5
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 3.7e-265 917.9 545 84.8
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 6.3e-265 917.1 541 82.3
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 8.2e-265 916.8 552 82.6
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.4e-264 916.0 552 82.4
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.8e-264 915.6 545 85.3
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.1e-264 914.4 538 86.1
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 6.9e-264 913.7 541 82.8
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 6.9e-264 913.7 541 85.2
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.3e-262 909.4 545 80.2
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 2.9e-262 908.3 545 84.2
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 8.5e-262 906.7 552 79.7
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.2e-260 902.9 545 81.3
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 3.6e-260 901.4 540 84.3
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 6.1e-260 900.6 550 83.6
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.4e-259 899.4 539 84.2
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 6.7e-259 897.1 549 80.3
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 6.7e-259 897.1 545 78.5
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.1e-258 896.3 543 84.0
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.5e-258 895.2 545 79.3
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 4.3e-258 894.4 539 83.1
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.2e-257 890.2 538 82.9
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 2.4e-256 888.6 613 72.4
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.1e-256 888.3 613 72.3
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 5.3e-256 887.5 538 83.5
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 1.5e-255 885.9 548 81.8
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.0e-254 883.2 539 82.6
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.0e-254 883.2 548 81.6
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.7e-254 882.5 539 82.0
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 2.9e-254 881.7 544 82.5
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.0e-254 880.9 544 78.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.0e-254 880.9 544 78.7
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 6.5e-254 880.6 540 83.3
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.5e-254 880.2 539 82.4
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.9e-253 879.0 539 83.3
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.5e-253 878.6 544 79.8
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 3.2e-253 878.2 544 80.5
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 4.2e-253 877.9 583 75.5
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 5.5e-253 877.5 533 83.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 7.2e-253 877.1 544 79.8
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 1.2e-252 876.3 544 78.9
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.2e-252 876.3 566 79.2
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.1e-252 875.5 544 78.3
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.1e-252 875.5 544 78.3
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 3.6e-252 874.8 541 77.3
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.0e-251 873.2 544 80.5
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 3.0e-251 871.7 544 80.0
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 3.9e-251 871.3 552 79.7
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 3.3e-250 868.2 541 78.9
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 4.4e-250 867.8 544 79.6
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 7.4e-250 867.1 544 80.0
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 9.7e-250 866.7 545 77.6
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 6.3e-249 864.0 642 69.2
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.8e-248 862.4 566 76.3
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.5e-247 859.4 539 80.9
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.2e-245 851.7 556 76.8
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 9.4e-245 850.1 539 81.1
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 8.0e-244 847.0 540 77.4
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 2.6e-242 842.0 540 81.1
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.3e-238 829.7 599 73.3
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 7.2e-237 823.9 537 76.7
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-236 823.2 550 79.1
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.9e-229 799.3 534 74.5
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.5e-229 798.9 544 73.9
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.1e-224 783.5 538 73.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 5.4e-224 781.2 453 87.0
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.7e-222 776.2 536 72.6
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.7e-222 776.2 534 73.8
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 4.2e-221 771.5 536 69.8
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.2e-215 753.4 552 69.4
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.3e-214 750.0 554 69.3
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.9e-200 703.0 552 69.4
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 3.0e-198 695.7 757 52.0
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 3.6e-196 688.7 588 60.9
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.5e-194 683.3 377 86.5
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.7e-191 672.5 540 65.9
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.0e-190 670.6 376 85.6
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 6.6e-190 667.9 400 80.2
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.1e-188 662.9 533 65.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 4.7e-180 635.2 441 71.0
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 9.0e-179 630.9 535 57.0
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 2.6e-178 629.4 540 57.8
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 7.3e-173 611.3 365 79.7
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 1.3e-164 583.9 536 54.7
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 6.5e-153 545.0 389 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 3.8e-145 519.2 499 52.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.1e-141 507.7 490 54.7
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.5e-141 507.3 373 65.7
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.3e-140 504.2 338 68.3
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 3.9e-126 456.1 269 81.0
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.3e-121 441.0 272 77.9
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 2.9e-113 413.3 632 38.1
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 8.8e-110 401.7 378 60.1
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 1.3e-108 397.9 325 65.5
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.8e-107 394.0 220 82.7
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 1.4e-102 377.9 272 69.1
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 5.4e-83 312.8 401 42.6
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.6e-71 274.6 159 79.2
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 3.1e-70 270.4 192 71.9
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.6e-69 267.3 247 57.9
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.9e-67 261.2 154 83.8
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.9e-65 253.4 551 30.7
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 3.3e-64 250.4 602 29.4
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 4.3e-64 250.0 157 77.7
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.3e-63 248.4 152 78.9
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.6e-58 231.5 139 82.7
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.9e-56 224.6 170 67.6
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.8e-55 219.9 819 23.4
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 4.9e-52 209.9 163 62.0
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.4e-51 207.6 152 71.7
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.4e-51 206.5 251 47.8
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.2e-50 205.3 152 71.1
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 2.7e-50 204.1 141 70.9
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 6.9e-46 189.5 229 43.7
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.9e-44 184.1 109 81.7
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.1e-40 172.2 192 50.5
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 7.4e-40 169.5 136 61.8
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.6e-37 161.0 123 69.1
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 4.6e-34 150.2 85 87.1
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 7.7e-13 79.7 122 37.7
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.2e-11 74.3 53 71.7
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.3e-08 64.3 85 51.8
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 9.7e-08 62.8 38 63.2
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.8e-07 61.2 80 43.8
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 1.1e-06 59.3 132 29.5


User provided reference genes

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