Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 1.9e-161 572.4 283 100.0
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 6.5e-133 477.6 274 86.9
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 3.7e-128 461.8 275 84.0
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 3.7e-128 461.8 274 83.6
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 3.1e-127 458.8 274 83.2
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.8e-122 443.0 273 79.1
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 2.3e-122 442.6 274 78.8
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 2.6e-121 439.1 273 78.0
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 9.7e-121 437.2 275 77.8
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 1.7e-120 436.4 286 75.2
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.7e-120 436.4 272 79.4
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 6.3e-120 434.5 286 74.5
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.2e-118 430.3 273 76.6
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.5e-118 429.9 272 78.3
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 2.0e-118 429.5 272 76.5
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 2.0e-118 429.5 274 76.3
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 2.6e-118 429.1 269 76.2
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 4.5e-118 428.3 271 75.6
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 5.9e-118 427.9 272 76.8
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 5.9e-118 427.9 272 75.7
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.0e-117 427.2 272 77.2
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 1.7e-117 426.4 273 74.4
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 1.7e-117 426.4 271 76.0
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 2.2e-117 426.0 272 75.0
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 2.2e-117 426.0 273 75.8
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 2.9e-117 425.6 272 77.2
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.9e-117 425.6 271 75.3
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 3.8e-117 425.2 272 75.4
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 3.8e-117 425.2 273 74.7
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 6.5e-117 424.5 271 76.0
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 8.5e-117 424.1 272 75.7
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 8.5e-117 424.1 273 76.2
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 1.1e-116 423.7 272 75.0
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 1.1e-116 423.7 272 75.0
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.1e-116 423.7 273 76.9
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 1.1e-116 423.7 272 75.4
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 1.1e-116 423.7 272 76.1
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 1.4e-116 423.3 272 74.3
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.4e-116 423.3 271 75.3
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.9e-116 422.9 273 75.5
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 2.5e-116 422.5 273 73.3
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 4.2e-116 421.8 269 75.8
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 4.2e-116 421.8 272 74.6
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 7.2e-116 421.0 272 74.6
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 7.2e-116 421.0 273 74.7
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 9.4e-116 420.6 272 74.6
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 9.4e-116 420.6 272 74.3
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 1.2e-115 420.2 272 73.5
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.2e-115 420.2 272 74.6
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 1.2e-115 420.2 272 74.3
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.6e-115 419.9 272 74.6
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 1.6e-115 419.9 273 73.6
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.6e-115 419.9 272 75.0
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 2.1e-115 419.5 272 73.9
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 2.1e-115 419.5 269 74.7
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 2.7e-115 419.1 271 74.9
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.6e-115 418.7 273 73.3
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 4.7e-115 418.3 272 73.9
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 4.7e-115 418.3 272 74.6
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 4.7e-115 418.3 272 74.6
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 4.7e-115 418.3 286 72.0
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 8.0e-115 417.5 273 74.7
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 8.0e-115 417.5 272 75.7
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.0e-114 417.2 272 74.6
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 1.4e-114 416.8 269 73.2
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 3.0e-114 415.6 272 73.2
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.9e-114 415.2 279 72.8
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 5.2e-114 414.8 273 75.1
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 6.7e-114 414.5 280 73.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 6.7e-114 414.5 260 76.9
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 8.8e-114 414.1 273 74.0
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 1.1e-113 413.7 271 73.4
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.5e-113 413.3 279 72.8
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.5e-113 413.3 272 73.9
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 1.5e-113 413.3 274 73.7
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.5e-113 413.3 269 73.2
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 1.5e-113 413.3 273 74.0
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 1.5e-113 413.3 273 74.0
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 2.0e-113 412.9 271 73.8
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 3.3e-113 412.1 273 72.9
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 5.7e-113 411.4 271 74.2
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 7.4e-113 411.0 278 72.7
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 2.2e-112 409.5 273 71.8
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 2.8e-112 409.1 271 72.3
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 3.7e-112 408.7 273 71.1
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 3.7e-112 408.7 287 71.4
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 8.2e-112 407.5 273 71.4
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 1.1e-111 407.1 307 67.4
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 1.8e-111 406.4 273 73.3
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 7.0e-111 404.4 273 72.5
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.6e-110 403.3 273 72.9
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 1.6e-110 403.3 287 69.7
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 2.6e-110 402.5 273 72.2
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 2.6e-110 402.5 272 71.0
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 2.6e-110 402.5 321 63.9
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.3e-109 400.2 273 71.4
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 5.0e-109 398.3 273 69.6
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.5e-108 394.8 272 70.6
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 9.4e-108 394.0 271 71.2
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 1.2e-107 393.7 272 71.0
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.6e-107 393.3 287 67.6
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 6.1e-107 391.3 269 69.5
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 8.0e-107 391.0 287 67.9
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.4e-106 390.2 273 71.1
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.4e-106 390.2 273 71.1
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.3e-106 389.4 273 71.1
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.6e-105 386.0 271 70.5
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.7e-104 382.1 269 68.8
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 2.0e-102 376.3 286 65.4
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 3.5e-102 375.6 267 70.4
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 4.7e-99 365.2 270 68.9
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 8.0e-99 364.4 231 75.8
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.4e-98 363.6 267 67.8
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 9.8e-97 357.5 230 74.3
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.4e-95 352.8 233 73.0
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.6e-94 350.1 269 61.3
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 2.0e-94 349.7 231 72.3
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 5.9e-94 348.2 230 73.5
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 5.0e-93 345.1 272 65.1
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 1.5e-92 343.6 270 61.9
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 2.5e-92 342.8 269 63.2
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 5.5e-92 341.7 283 60.8
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-91 340.5 237 70.9
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.2e-91 340.5 237 70.9
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 6.1e-91 338.2 284 60.2
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 1.0e-90 337.4 241 70.5
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 6.8e-90 334.7 230 70.0
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.6e-89 332.8 274 63.5
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 2.3e-85 319.7 281 58.7
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 6.6e-85 318.2 273 59.7
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 1.4e-82 310.5 277 59.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 5.8e-81 305.1 273 59.3
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 3.1e-74 282.7 149 88.6
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.5e-73 280.4 149 89.3
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.9e-71 273.5 236 61.4
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 8.9e-66 254.6 278 50.0
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 2.9e-64 249.6 274 50.7
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 1.2e-57 227.6 271 46.5
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.5e-36 157.5 127 59.8
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 1.4e-31 141.0 249 38.6
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 7.1e-31 138.7 226 38.1
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.1e-27 127.1 98 60.2
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 3.7e-27 126.3 86 72.1
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 4.0e-26 122.9 82 74.4
QL10p065861 Quercus lobata HOM05D001716 ORTHO05D004234 1.6e-22 110.9 56 92.9
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 5.1e-21 105.9 59 81.4
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 1.3e-16 91.3 58 63.8
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.6e-14 84.3 44 86.4
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 1.1e-12 78.2 67 59.7
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 3.3e-12 76.6 58 55.2
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 2.8e-11 73.6 37 86.5
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.4e-10 71.2 47 61.7
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.5e-09 67.8 57 61.4
QL05p063882 Quercus lobata HOM05D001716 ORTHO05D004234 1.3e-08 64.7 35 82.9
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 2.1e-06 57.4 34 70.6


User provided reference genes

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