Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.9e-174 615.1 314 100.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.3e-145 517.7 316 84.8
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.2e-143 513.5 314 84.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.9e-142 508.8 314 83.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.8e-100 369.4 319 58.0
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.3e-97 360.5 269 63.2
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.2e-97 359.8 270 62.6
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.8e-96 356.7 317 55.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-96 356.7 269 62.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.3e-94 349.7 267 61.8
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.3e-94 349.7 268 61.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 9.5e-93 344.4 313 55.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-92 343.2 265 60.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.6e-92 342.4 304 55.9
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 8.0e-92 341.3 272 60.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.4e-91 340.5 266 59.8
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.8e-91 340.1 313 53.7
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.3e-91 339.7 304 56.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.1e-91 339.3 304 55.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 5.2e-91 338.6 279 58.4
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.2e-90 337.4 299 57.2
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.2e-90 337.4 308 55.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.6e-90 336.3 316 55.7
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.6e-90 336.3 266 58.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 4.4e-90 335.5 266 58.6
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 7.5e-90 334.7 296 56.4
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.8e-90 334.3 269 61.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.9e-89 332.8 286 56.3
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 6.4e-89 331.6 266 57.5
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-88 330.9 302 55.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-88 330.9 302 55.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-88 330.9 296 54.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-88 330.5 291 54.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 5.4e-88 328.6 266 58.3
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 7.0e-88 328.2 303 55.4
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-87 327.4 266 57.1
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.6e-87 327.0 274 56.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.0e-87 326.6 317 53.6
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.7e-87 326.2 306 56.2
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 7.8e-87 324.7 268 57.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.0e-86 324.3 270 57.4
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.3e-86 323.2 274 57.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.0e-86 322.8 266 57.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.0e-86 322.8 277 54.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.9e-86 322.4 266 56.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.9e-86 322.4 266 54.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 5.0e-86 322.0 269 58.7
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 5.0e-86 322.0 305 51.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 8.6e-86 321.2 275 57.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 8.6e-86 321.2 277 54.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.5e-85 320.5 283 54.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-85 319.7 269 56.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.3e-85 319.3 303 53.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.3e-85 319.3 268 54.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.3e-85 318.9 269 55.8
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.2e-84 317.4 269 56.9
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-84 317.4 308 50.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.6e-84 317.0 267 56.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-84 316.2 308 50.6
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-83 313.5 314 51.9
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.8e-83 313.5 315 51.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.3e-83 313.2 269 53.9
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.3e-83 313.2 269 53.9
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 6.8e-83 311.6 268 54.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 9.8e-82 307.8 303 51.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 2.2e-81 306.6 311 52.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.9e-81 306.2 301 48.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.9e-80 303.5 294 48.3
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.9e-80 303.5 292 50.0
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.9e-80 303.5 266 53.0
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.1e-80 302.4 275 51.6
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 4.1e-80 302.4 267 54.7
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.2e-80 301.2 269 55.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.5e-79 299.3 268 52.6
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.6e-79 298.9 308 48.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.6e-79 298.9 280 51.1
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.0e-78 297.7 270 52.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.7e-78 297.0 294 51.7
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 3.3e-77 292.7 314 50.3
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 7.3e-77 291.6 263 52.9
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 9.5e-77 291.2 269 51.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-76 290.8 319 47.3
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.6e-76 290.4 263 52.5
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.6e-76 290.4 270 51.9
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.8e-76 289.7 290 46.6
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.8e-76 289.7 315 46.3
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.1e-75 287.7 286 50.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.1e-75 287.7 314 46.2
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 270 51.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.3e-75 286.6 310 45.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.1e-75 286.2 295 46.8
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 5.2e-75 285.4 316 46.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.2e-75 285.4 313 45.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-74 283.9 280 50.4
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.6e-74 283.1 305 45.9
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.4e-74 282.7 273 53.5
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.3e-73 280.8 319 45.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.3e-73 280.8 311 45.7
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.7e-73 280.4 268 48.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.2e-73 280.0 270 52.2
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 3.7e-73 279.3 272 52.2
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.7e-73 279.3 268 49.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.1e-72 275.8 304 44.4
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.1e-72 275.0 313 46.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.1e-72 275.0 266 46.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 2.7e-71 273.1 318 45.6
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.5e-71 272.7 278 47.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 7.8e-71 271.6 305 45.6
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.7e-70 270.4 263 50.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.1e-70 268.9 243 51.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.6e-68 263.8 278 49.3
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.1e-67 261.2 265 47.5
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.4e-67 260.8 198 63.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.6e-66 256.5 202 61.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.6e-66 256.5 202 61.4
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 4.4e-66 255.8 230 54.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.6e-66 255.0 292 43.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 6.4e-65 251.9 201 56.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.8e-63 245.0 268 46.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.0e-62 244.6 276 45.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.8e-60 235.7 234 47.9
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.1e-59 233.0 260 45.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.0e-58 230.3 262 43.1
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.4e-56 222.2 240 45.8
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.8e-52 209.9 293 42.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.8e-52 209.9 267 41.9
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 8.1e-52 208.4 290 40.7
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.4e-50 203.0 260 40.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 4.5e-50 202.6 259 39.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.9e-49 199.1 168 56.0
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.4e-48 197.6 171 54.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.5e-47 193.0 276 37.7
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.6e-47 192.6 264 39.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.3e-46 191.0 178 50.6
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.1e-46 189.1 260 38.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.7e-46 188.3 268 37.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-30 137.1 208 38.5
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 8.7e-30 135.2 98 62.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.8e-20 102.8 127 40.2
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.3e-20 102.4 204 31.4
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 2.4e-19 100.5 98 44.9
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.0e-18 97.4 92 47.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.0e-17 92.8 132 37.9
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.7e-13 78.6 98 41.8
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 9.7e-13 78.6 98 41.8
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.7e-12 77.8 226 28.3
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.3e-12 75.9 64 53.1
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 8.2e-12 75.5 263 22.8
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.0e-09 68.6 199 26.6


User provided reference genes

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