Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023833 Sechium edule HOM05D000222 ORTHO05D372944 3.1e-147 525.0 252 100.0
Sed0022559 Sechium edule HOM05D000222 ORTHO05D004962 8.3e-23 111.7 63 85.7
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 9.2e-22 108.2 59 84.7
MELO3C005247.2 Cucumis melo HOM05D000222 ORTHO05D004962 1.0e-20 104.8 59 81.4
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 1.3e-20 104.4 59 81.4
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 7.3e-19 98.6 59 78.0
CiPaw.06G056800 Carya illinoinensis HOM05D000222 ORTHO05D004962 2.1e-13 80.5 151 39.1
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 2.1e-13 80.5 58 56.9
Cfa015061 Carpinus fangiana HOM05D000222 ORTHO05D004962 4.6e-13 79.3 137 41.6
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 4.6e-13 79.3 136 40.4
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 6.0e-13 79.0 58 55.2
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 6.0e-13 79.0 58 56.9
Haze_10830 Corylus avellana HOM05D000222 ORTHO05D004962 1.0e-12 78.2 137 40.9
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 1.7e-12 77.4 151 37.7
QL03p038766 Quercus lobata HOM05D000222 ORTHO05D004962 3.9e-12 76.3 59 54.2
Hund22722 Selenicereus undatus HOM05D000222 ORTHO05D004962 3.9e-12 76.3 61 50.8
AUR62011848 Chenopodium quinoa HOM05D000222 ORTHO05D004962 5.1e-12 75.9 60 50.0
AUR62024692 Chenopodium quinoa HOM05D000222 ORTHO05D004962 5.1e-12 75.9 60 50.0
TWI74G1486 Tripterygium wilfordii HOM05D000222 ORTHO05D004962 5.1e-12 75.9 58 53.4
EL10Ac6g14203 Beta vulgaris HOM05D000222 ORTHO05D004962 6.6e-12 75.5 62 48.4
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 8.6e-12 75.1 58 53.4
Dinv05676 Davidia involucrata HOM05D000222 ORTHO05D004962 8.6e-12 75.1 58 53.4
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 8.6e-12 75.1 112 32.1
RcHm_v2.0_Chr4g0442161 Rosa chinensis HOM05D000222 ORTHO05D004962 8.6e-12 75.1 132 40.2
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 1.1e-11 74.7 115 33.0
Sc14g0006790 Simmondsia chinensis HOM05D000222 ORTHO05D004962 1.1e-11 74.7 60 51.7
AUR62024691 Chenopodium quinoa HOM05D000222 ORTHO05D004962 1.5e-11 74.3 60 48.3
TAR374G0583 Trochodendron aralioides HOM05D000222 ORTHO05D004962 1.9e-11 73.9 62 51.6
CSS0002438 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 2.5e-11 73.6 58 53.4
Sc14g0006780 Simmondsia chinensis HOM05D000222 ORTHO05D004962 2.5e-11 73.6 60 50.0
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 3.3e-11 73.2 60 48.3
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 3.3e-11 73.2 59 52.5
FAN07G0558 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.3e-11 73.2 126 39.7
FAN17G0744 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.3e-11 73.2 126 39.7
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 4.3e-11 72.8 58 50.0
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 5.6e-11 72.4 59 50.8
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 5.6e-11 72.4 58 51.7
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 7.3e-11 72.0 59 50.8
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 7.3e-11 72.0 58 53.4
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 7.3e-11 72.0 59 50.8
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 7.3e-11 72.0 121 40.5
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 7.3e-11 72.0 121 40.5
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 7.3e-11 72.0 59 50.8
CiPaw.05G188400 Carya illinoinensis HOM05D000222 ORTHO05D004962 9.5e-11 71.6 137 38.0
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 9.5e-11 71.6 137 40.1
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 1.2e-10 71.2 58 51.7
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 1.2e-10 71.2 64 46.9
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 1.6e-10 70.9 58 50.0
Glyma.08G094100 Glycine max HOM05D000222 ORTHO05D004962 1.6e-10 70.9 58 48.3
Actinidia38426 Actinidia chinensis HOM05D000222 ORTHO05D004962 2.1e-10 70.5 58 48.3
Ca_11582_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 2.1e-10 70.5 58 50.0
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 2.1e-10 70.5 142 42.3
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 2.1e-10 70.5 58 51.7
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 2.8e-10 70.1 59 49.2
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 2.8e-10 70.1 59 49.2
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 2.8e-10 70.1 59 49.2
Potri.008G138100 Populus trichocarpa HOM05D000222 ORTHO05D004962 2.8e-10 70.1 58 50.0
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 2.8e-10 70.1 59 50.8
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 3.6e-10 69.7 58 51.7
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 3.6e-10 69.7 58 51.7
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 3.6e-10 69.7 58 50.0
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 3.6e-10 69.7 58 48.3
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 4.7e-10 69.3 60 48.3
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.7e-10 69.3 57 49.1
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 4.7e-10 69.3 58 50.0
Glyma.07G174100 Glycine max HOM05D000222 ORTHO05D004962 6.2e-10 68.9 58 51.7
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 6.2e-10 68.9 58 51.7
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 6.2e-10 68.9 58 48.3
Sabra08G0105200 Salix brachista HOM05D000222 ORTHO05D004962 6.2e-10 68.9 58 50.0
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 6.2e-10 68.9 58 50.0
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 8.1e-10 68.6 59 47.5
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 8.1e-10 68.6 59 49.2
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 8.1e-10 68.6 59 49.2
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 1.1e-09 68.2 59 49.2
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 1.1e-09 68.2 59 49.2
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 1.1e-09 68.2 59 49.2
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 1.1e-09 68.2 59 49.2
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 1.1e-09 68.2 59 49.2
TAR622G0644 Trochodendron aralioides HOM05D000222 ORTHO05D004962 1.1e-09 68.2 133 36.1
Aqoxy3G04105 Aquilegia oxysepala HOM05D000222 ORTHO05D004962 1.4e-09 67.8 57 54.4
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 1.4e-09 67.8 59 47.5
Eucgr.B02662 Eucalyptus grandis HOM05D000222 ORTHO05D004962 1.8e-09 67.4 57 50.9
Nitab4.5_0003878g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 1.8e-09 67.4 58 48.3
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 1.8e-09 67.4 58 48.3
Lsat_1_v5_gn_2_36420 Lactuca sativa HOM05D000222 ORTHO05D004962 2.3e-09 67.0 59 44.1
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 2.3e-09 67.0 142 35.9
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 3.1e-09 66.6 58 46.6
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 3.1e-09 66.6 58 48.3
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 4.0e-09 66.2 58 46.6
Hma1.2p1_1450F.1_g284240 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 4.0e-09 66.2 59 49.2
Gohir.A13G029500 Gossypium hirsutum HOM05D000222 ORTHO05D004962 6.8e-09 65.5 59 45.8
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 6.8e-09 65.5 58 44.8
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 8.9e-09 65.1 131 39.7
ECA246G4790 Erigeron canadensis HOM05D000222 ORTHO05D004962 8.9e-09 65.1 59 44.1
HanXRQChr15g0471771 Helianthus annuus HOM05D000222 ORTHO05D004962 8.9e-09 65.1 65 41.5
Sabra10G0075300 Salix brachista HOM05D000222 ORTHO05D004962 8.9e-09 65.1 58 50.0
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 8.9e-09 65.1 59 47.5
Nn4g24491 Nelumbo nucifera HOM05D000222 ORTHO05D004962 1.2e-08 64.7 57 49.1
Oeu054230.1 Olea europaea HOM05D000222 ORTHO05D004962 1.2e-08 64.7 66 37.9
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 1.2e-08 64.7 64 45.3
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 1.5e-08 64.3 58 46.6
Gohir.D13G027800 Gossypium hirsutum HOM05D000222 ORTHO05D004962 1.5e-08 64.3 59 45.8
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 1.5e-08 64.3 59 45.8
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 1.5e-08 64.3 58 48.3
Peaxi162Scf00937g00112 Petunia axillaris HOM05D000222 ORTHO05D004962 1.5e-08 64.3 60 45.0
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 2.6e-08 63.5 131 38.9
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 4.4e-08 62.8 61 39.3
CANSAT78G2041 Cannabis sativa HOM05D000222 ORTHO05D004962 5.8e-08 62.4 57 45.6
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 5.8e-08 62.4 58 44.8
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 5.8e-08 62.4 58 48.3
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 7.6e-08 62.0 109 32.1
Sopen01g001160 Solanum pennellii HOM05D000222 ORTHO05D004962 7.6e-08 62.0 58 46.6
PGSC0003DMG400022773 Solanum tuberosum HOM05D000222 ORTHO05D004962 1.3e-07 61.2 58 44.8
GSVIVG01011609001 Vitis vinifera HOM05D000222 ORTHO05D004962 1.3e-07 61.2 85 47.1
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 1.7e-07 60.8 57 47.4
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 2.2e-07 60.5 57 45.6
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 2.2e-07 60.5 57 47.4
Potri.010G102600 Populus trichocarpa HOM05D000222 ORTHO05D004962 2.9e-07 60.1 57 47.4
Solyc05g018500.3 Solanum lycopersicum HOM05D000222 ORTHO05D004962 2.9e-07 60.1 58 41.4
Sopen05g015580 Solanum pennellii HOM05D000222 ORTHO05D004962 2.9e-07 60.1 58 41.4
MBI19_g10908_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D004962 3.7e-07 59.7 57 47.4
Os03g0239200 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D004962 3.7e-07 59.7 58 43.1
PGSC0003DMG400027429 Solanum tuberosum HOM05D000222 ORTHO05D004962 4.9e-07 59.3 58 41.4
PGSC0003DMG400022774 Solanum tuberosum HOM05D000222 ORTHO05D004962 6.4e-07 58.9 59 44.1
SEGI_19706 Sequoiadendron giganteum HOM05D000222 ORTHO05D007489 1.1e-06 58.2 58 50.0
SEGI_25244 Sequoiadendron giganteum HOM05D000222 ORTHO05D007489 1.1e-06 58.2 58 50.0
Zm00001eb010160 Zea mays HOM05D000222 ORTHO05D004962 3.2e-06 56.6 58 41.4
Zm00001eb399110 Zea mays HOM05D000222 ORTHO05D004962 3.2e-06 56.6 58 41.4
HPP92_004255 Vanilla planifolia HOM05D000222 ORTHO05D004962 5.4e-06 55.8 57 47.4
CDE05G0510 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 9.2e-06 55.1 57 45.6
Sopen04g003510 Solanum pennellii HOM05D000222 ORTHO05D004962 9.2e-06 55.1 67 40.3


User provided reference genes

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